PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533300.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 262aa    MW: 29153.7 Da    PI: 9.9449
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221762449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  XP_010533300.1 17 NNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 62
                    79*************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.493666IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-31665IPR002100Transcription factor, MADS-box
CDDcd002651.38E-32776No hitNo description
SuperFamilySSF554552.35E-26788IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-18828IPR002100Transcription factor, MADS-box
PfamPF003193.6E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVRRNKGRQK VEMIKMNNES NLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGRKVF  60
SFGHPCVDTI IERFINRGPP PHQQNNTTMQ LIEAHRNATI CDLNAQLTQT LGQLETEKKR  120
GEELSKIRKS NKNVQNWWES PIEELNITQL TQLKGALEDL KKTIAAQASK LLQSTVPRQF  180
YVGNSSNNVG GGNGSGLNLL DQQRAITTNR FIPNAMSFGY DNQGFRSEFT SGFKQEYNSS  240
GYDEPGNNSN NNPNSGSGGG YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15789284MEF2 CHIMERA
6byy_B1e-15789284MEF2 CHIMERA
6byy_C1e-15789284MEF2 CHIMERA
6byy_D1e-15789284MEF2 CHIMERA
6bz1_A1e-15789284MEF2 CHIMERA
6bz1_B1e-15789284MEF2 CHIMERA
6bz1_C1e-15789284MEF2 CHIMERA
6bz1_D1e-15789284MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533300.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-93AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A178UGT81e-91A0A178UGT8_ARATH; AGL62
STRINGXP_010533300.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-86AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]