PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533287.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 146aa    MW: 15994.3 Da    PI: 5.6578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-192676255
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa+a+++a+ +++g
  XP_010533287.1 26 KYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFETAEEAARAYDRAAYAMRG 76
                    8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.9472684IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-232686IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-312686IPR001471AP2/ERF domain
SMARTSM003802.3E-352690IPR001471AP2/ERF domain
CDDcd000187.73E-192685No hitNo description
PfamPF008479.2E-152676IPR001471AP2/ERF domain
PRINTSPR003675.4E-122738IPR001471AP2/ERF domain
PRINTSPR003675.4E-125066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEHNNNGNNK CRYSNSDTTT ATGQVKYRGV RRRPWGKYAA EIRDSARHGA RVWLGTFETA  60
EEAARAYDRA AYAMRGSLAI LNFPHEYPTG RHSGGASSSA AAATAATSYG GDGGKEVIEF  120
EYLDDSLLEE LLEYGESYGK NTPNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-382612714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533287.11e-104PREDICTED: ethylene-responsive transcription factor ERF095
SwissprotQ9LTC59e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D3D5K18e-47A0A0D3D5K1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELV98e-47A0A3P6ELV9_BRAOL; Uncharacterized protein
STRINGXP_010533287.11e-103(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]