PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533270.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 374aa    MW: 43156.6 Da    PI: 8.4533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08731126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  +++ G+C++ ++C+FaHg
  XP_010533270.1  7 YKTKLCILYQKRGQCSR-PNCTFAHG 31
                    9****************.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-6436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-11538IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034632IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568633IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSGRSMYKTK LCILYQKRGQ CSRPNCTFAH GSAELRRPGD SSFSARRNNL DNDLRDKLDR  60
RFSLERRHSS GRNGRGLPRF SGHDDNRPFE KRRDKDYREN QKLDDQGDYA GGLRAGNRID  120
DQAEDERNKF PGYNNVLEEQ LKEVELDIKM LSSDKLRIGA SIEEKAQEAD ILTSRIRELE  180
TQLEREKEEC RRITSSVKKF VKEYNRFLRA QEDVKRSQAR LQKLGNQLST YLTGNGGNDR  240
DAEIDIVNNE ENNGSHHPRT AHDAQDELQN ASSFTRKRHQ VDQATPKEPL EDASAMLTGG  300
GEEKVENSRL SRRSRWTMDD SKLSSEKETT GWVSEDAINE PSLKEDKRKR RRFSSAYNPN  360
ERNNALLVLI CDVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346351KRKRRR
2347351RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533270.20.0PREDICTED: zinc finger CCCH domain-containing protein 40
SwissprotQ93XW71e-153C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLV4LYT81e-159V4LYT8_EUTSA; Uncharacterized protein
STRINGXP_010533270.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-136C3H family protein