PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | YABBY | ||||||||
Protein Properties | Length: 226aa MW: 25541.7 Da PI: 7.8212 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228.3 | 1.9e-70 | 6 | 169 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++f+ ++q+C+vqC++C+til+vsvP++sl+kvvtvrCGhCtsllsvn++kas +lla+ h +++ +ee +e+e++k+n++k + + XP_010533185.1 6 HLFDLPGQICHVQCGYCSTILLVSVPFSSLSKVVTVRCGHCTSLLSVNMMKASfiplHLLASLTH-----HDQEKEEATTEQESWKENQVKGSPP 95 78999*********************************************999666666777666.....5556788889999999999998877 PP YABBY 93 stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + +ss +nede+vprv + v++PPe+rqr+Psayn+fikeei r+ka+nP+ish+eafs+aaknWahfP++h++ XP_010533185.1 96 NLATSS----DNEDEDVPRVNQvVNKPPERRQRAPSAYNCFIKEEISRLKAQNPSISHKEAFSLAAKNWAHFPRVHHK 169 766665....89*********9899***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.6E-62 | 11 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.5E-9 | 110 | 164 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.2E-6 | 117 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MTTLNHLFDL PGQICHVQCG YCSTILLVSV PFSSLSKVVT VRCGHCTSLL SVNMMKASFI 60 PLHLLASLTH HDQEKEEATT EQESWKENQV KGSPPNLATS SDNEDEDVPR VNQVVNKPPE 120 RRQRAPSAYN CFIKEEISRL KAQNPSISHK EAFSLAAKNW AHFPRVHHKR VADQCFSHGD 180 ETAPCKSHHC SAHQQQFRLQ GHEEGDNGYR EKKAPRHTLW GKSPFE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533185.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533185.1 | 1e-170 | PREDICTED: axial regulator YABBY 4-like isoform X1 | ||||
Swissprot | Q9LDT3 | 1e-105 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A087HQN1 | 1e-108 | A0A087HQN1_ARAAL; Uncharacterized protein | ||||
STRING | XP_010533185.1 | 1e-170 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-108 | YABBY family protein |
Publications ? help Back to Top | |||
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