PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533032.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRF

Protein Properties

Length: 330aa MW: 37339.3 Da PI: 8.142

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.8	5.1e-25	78	121	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e XP_010533032.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 121 79***************************************987 PP
2	QLQ	60.1	6.3e-21	7	42	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++Ky++a++PvPp+Ll++i++ XP_010533032.1 7 PFTESQWEELEHQALIFKYIVAGVPVPPDLLFPIRR 42 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	9.9E-13	6	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.286	7	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.7E-15	7	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.003	78	122	IPR014977	WRC domain
Pfam	PF08879	1.1E-20	79	121	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MATSRVPFTE SQWEELEHQA LIFKYIVAGV PVPPDLLFPI RRTLISSSSH LSSKFFSRAA 60 APHFSWYVYD MGLGRKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGKNRSRKPV 120 EFSNTNSSSS SSSSSSSSVS ATSSTFSFNN LKVNTNLSSL CLNPLSLSRQ HNNAPRALFL 180 ESSGSSCPFT ANNDLRGRRS DYMDDFFSIE PSGSIKSFSG SSMEDGRWGF TPLTTSSYSQ 240 KQRNNNNYHY SVEGAAKDEK PSRQCFILGT DIATHETPLM LGKKMKQSED HGNEEEEEEE 300 EEEQRNKRVH RFLDEWPSSN TPSVSTSLFI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533032.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC770070	4e-39	KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533032.1	0.0	PREDICTED: growth-regulating factor 6-like
Swissprot	Q9ZQ12	6e-71	GRF6_ARATH; Growth-regulating factor 6
TrEMBL	A0A067KNN5	1e-76	A0A067KNN5_JATCU; Uncharacterized protein
STRING	XP_010533032.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14101	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06200.1	1e-52	growth-regulating factor 6

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]