PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532994.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 380aa    MW: 42509.5 Da    PI: 7.4678
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-114165226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C +++rtG C yG++C+F+H+
  XP_010532994.1 41 DEPDCLYYLRTGSCGYGSNCRFNHP 65
                    6899********************9 PP
2zf-CCCH375.6e-1285109327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +f++tG CkyG++Ck++H++
  XP_010532994.1  85 QPNCEYFLKTGACKYGASCKYHHPK 109
                     789********************96 PP
3zf-CCCH352.4e-11133154627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C++++rtGtCk+G++CkF+H++
  XP_010532994.1 133 CSYYMRTGTCKFGNTCKFHHPQ 154
                     ********************97 PP
4zf-CCCH36.11.1e-11239264227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+++ +GtC+yG+ C+F H++
  XP_010532994.1 239 DQPECRYYMNSGTCRYGSDCRFYHSK 264
                     689*********************95 PP
5zf-CCCH26.11.5e-08287311226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C  ++  G Ck+G+ C+F H+
  XP_010532994.1 287 GQSICASYMIHGVCKFGSGCRFDHP 311
                     7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-43966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6664067IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-94165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-64467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-54565IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.57782110IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-682109IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-985109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-686110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-588108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7126155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178127155IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4131153IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8133154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53237265IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5237264IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8239264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7240266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6243265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6284315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854285313IPR000571Zinc finger, CCCH-type
SMARTSM003560.014285312IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6287311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MQSSDQSSEN VEDSLERLNI HEDDEETRDL AQQRCYPDHP DEPDCLYYLR TGSCGYGSNC  60
RFNHPVSAAQ GVLSSRDEFP ERIGQPNCEY FLKTGACKYG ASCKYHHPKD RNGALPIFFN  120
ILGLPMRQDR KCCSYYMRTG TCKFGNTCKF HHPQPTSHVP LNGTPSVYGG FSAWSVPRLS  180
YMNGLSLQGP SGYIPFMVSP SHSILSAPSF DTFTSSSSTD IIGSINRHDS VHNLPERPDQ  240
PECRYYMNSG TCRYGSDCRF YHSKERITHI ESSSSAMNSV TLHSRPGQSI CASYMIHGVC  300
KFGSGCRFDH PLPQYPYASM FDSSAYLAYP RLSPIANPFV KTQTLPSRDS DRTKNMEPGR  360
EDGSLLSKKP VGMSEKSLFG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532994.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLA0A061DKN81e-127A0A061DKN8_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1
TrEMBLA0A1U8P1L91e-126A0A1U8P1L9_GOSHI; zinc finger CCCH domain-containing protein 3-like isoform X2
STRINGXP_010532994.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-98C3H family protein