PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532949.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 363aa    MW: 38754 Da    PI: 4.8583
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.6e-06544639
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    C+ ++e +   +C+++   lC  C ++ H+       H++
  XP_010532949.1  5 CDFCGEDKSVVYCRSDAARLCLACDQHVHSAnslskrHSR 44
                    ******99*********************65667777765 PP
2zf-B_box21.74.2e-074692441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htvvp 41
                      C+++++ ++ + C + ++ lC++C l+ H +         H++++
  XP_010532949.1 46 LLCDKCSSGPAWIRCVEEKVSLCHKCDLSAHGNslsasassgHKRQT 92
                    57******99*********************5588888888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.229147IPR000315B-box-type zinc finger
SMARTSM003368.1E-7547IPR000315B-box-type zinc finger
CDDcd000213.57E-8547No hitNo description
PROSITE profilePS501198.5174393IPR000315B-box-type zinc finger
CDDcd000210.005974793No hitNo description
SMARTSM003362.34893IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGYACDFCGE DKSVVYCRSD AARLCLACDQ HVHSANSLSK RHSRTLLCDK CSSGPAWIRC  60
VEEKVSLCHK CDLSAHGNSL SASASSGHKR QTISSYSGCP SSAELASIWS SVLAIPTLAD  120
GSTSEKALVM MSATENNKLH SQCSLVSPDI LDATATVRPS IPETSAFSDN LDQLIGTNTS  180
AKLPYPGIDH LGLSGDCVYE DFNLGVDFVL ENYDALFGAA LNDSDNLFEN GEVNNLLGEE  240
DLTAANLCSQ AIFAAEEISV RSANSNQPSC SNIASADSVW SNKAESTICF TSRQAHSSLS  300
FSGISGDTNS AVDNQDYGVS TSVILTGEPQ WRPPPTDASS LSSSRIDAVM RYREKKKTRK  360
LVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353360EKKKTRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057589.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A061DL861e-113A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGXP_010532949.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-87CONSTANS-like 9