PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532738.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 442aa    MW: 49639.9 Da    PI: 6.4604
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.61.2e-301849101
                     HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                     +++d++++e+ sws+n+nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i+r+k
  XP_010532738.1   1 MVDDSSTDEICSWSANKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEGFAKEQKHLLKNIHRRK 84 
                     899*******************************************************999.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-31183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-46183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.79E-30183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF902576.8E-595160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVDDSSTDEI CSWSANKNSF VVWNPPEFAR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE  60
RWEFANEGFA KEQKHLLKNI HRRKPIHSHS HPPTPTLDQE RAALEEEIDN LSREKAAIEE  120
KLLNSKQKKS TAKLQLEELT HQVDDMEKRQ ENLISVLEKA VRDPVFVEKF ARRVEQLDIS  180
AYNKRRKLPQ AEQSKPPSET SHLDNSSSSS RPELGSIFHQ SFSNKLRLEL SPAVSDMNLV  240
SHSIQSSNED GGNPKGRLSG GDPKGAQTRT EGLLFTPEAP ELADTGSCPR GLLLNYNARA  300
EALPQRLTSS EETDGNFSCH LNLTLASAPL PAKTAPQLAK TTQKSQDVGR YPEFNFNSRE  360
SNASEKKISA QEAAAGNQAT VAAPPARVND VFWEQFLTER PGSSDNEEAS STYRANPYED  420
QDESRTGHMI SRNTRSNEHL SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-1818336129Heat shock factor protein 1
5d5v_B1e-1818336129Heat shock factor protein 1
5d5v_D1e-1818336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532738.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A178UYF40.0A0A178UYF4_ARATH; HSFA5
STRINGXP_010532738.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]