PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532719.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 379aa    MW: 41449.3 Da    PI: 6.0779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10203250455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++++P +    ++   Ka +L + ++Y++sLq
  XP_010532719.1 203 SHSLAERARREKISERMKLLQDMVPGC----NRITGKAVMLDEIINYVQSLQ 250
                     8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-16197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-10197254No hitNo description
Gene3DG3DSA:4.10.280.102.1E-17199269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDKETEQTLN MLHLDQSDPF GNGNDPMIGD FLGRFCNTGE ISPLTLQSFP MNSQISENFP  60
ICGGIRFPYQ GHFGSDRAFG VPGSQTTAQE RNKSSLSDPD SGSASDRARA TASNPRKRKS  120
VPTANGKESP ASSSLTASNS KISGENAAVS MAAKRSKQEE AKSGKDANEK NDNKDGNKDN  180
AKPPEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK LLQDMVPGCN RITGKAVMLD  240
EIINYVQSLQ GQVEFLSMKL ATLHPRIEFN ANTLLSTEMF QPSEPLLQQS LYPIACSEPR  300
LPSGYLSLGK NIPGFIETQF PLNSSGISSL PSSDGFLQAE APAFWENDLQ SIVQMGFGDN  360
QRQPSMNCSE PTIQMKLEP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532719.10.0PREDICTED: transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLR0HM890.0R0HM89_9BRAS; Uncharacterized protein
STRINGXP_010532719.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-159bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]