PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010532575.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

CPP

Protein Properties

Length: 686aa MW: 75611.2 Da PI: 5.4834

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010532575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	387	425	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_010532575.1 387 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 425 689**********************************96 PP
2	TCR	51.1	2.7e-16	472	510	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN XP_010532575.1 472 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 510 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	386	427	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.564	387	512	IPR005172	CRC domain
Pfam	PF03638	7.6E-12	389	424	IPR005172	CRC domain
SMART	SM01114	3.7E-17	472	513	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-11	474	510	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MDTPQKSTTQ IGTPVSKSKF EDSPVFNYIN SLSPIKPFKS IPIAQTFSSL SFVSPPSVFT 60 SPHIASHKES RFFRSNHRST DPSTPEAISR DGSASNEEAV SAPESFHTNS SMEEEEEEEA 120 SIEPSTDDFE MELPQIPKCE TTPNPKPSPC ARDGNEVRGG GGSLSTEVVG MDMQRMCLEQ 180 KKNDVPDWES LISDATELLI FSSPNDSEAF TGLLQRTSNS VERFCADVIP KMHDNPGNGE 240 DMEHEAIPNL HRGVRRRCLD FEVPRKQRNE LSHKQTISNT PGPESSSRCL LPSIGLHLNS 300 ITMSSKDRKA SVLHEYSFSG KIQVSLPLVH SQENARENFV RAENEMDEEA SQAVDDVSKA 360 SVSEELNLSS SPKKKRRKFD RSGEGESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD 420 CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRNSDPVSEA GDDASKTPAS ARHKRGCNCK 480 KSNCLKKYCE CYQGGVGCSI NCRCEGCKNA FGRKDGMEGE QEEENETTEK NGTAKALQNP 540 EVFKEEEQNL SSGLPSTPLP LYRQPLVQLP FPSKDWTTSQ PFLGTGYSSS IFNGQSFGNS 600 DIGFSQSRFD KNFETIVEDG TEDDGDDMPE ILTRSPIATI TVVSPNGKRV SPPHLDSSGS 660 ILGRRNGGRK LILQSIPSFP SLTPHH

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MDTPQKSTTQ IGTPVSKSKF EDSPVFNYIN SLSPIKPFKS IPIAQTFSSL SFVSPPSVFT  60
SPHIASHKES RFFRSNHRST DPSTPEAISR DGSASNEEAV SAPESFHTNS SMEEEEEEEA  120
SIEPSTDDFE MELPQIPKCE TTPNPKPSPC ARDGNEVRGG GGSLSTEVVG MDMQRMCLEQ  180
KKNDVPDWES LISDATELLI FSSPNDSEAF TGLLQRTSNS VERFCADVIP KMHDNPGNGE  240
DMEHEAIPNL HRGVRRRCLD FEVPRKQRNE LSHKQTISNT PGPESSSRCL LPSIGLHLNS  300
ITMSSKDRKA SVLHEYSFSG KIQVSLPLVH SQENARENFV RAENEMDEEA SQAVDDVSKA  360
SVSEELNLSS SPKKKRRKFD RSGEGESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD  420
CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRNSDPVSEA GDDASKTPAS ARHKRGCNCK  480
KSNCLKKYCE CYQGGVGCSI NCRCEGCKNA FGRKDGMEGE QEEENETTEK NGTAKALQNP  540
EVFKEEEQNL SSGLPSTPLP LYRQPLVQLP FPSKDWTTSQ PFLGTGYSSS IFNGQSFGNS  600
DIGFSQSRFD KNFETIVEDG TEDDGDDMPE ILTRSPIATI TVVSPNGKRV SPPHLDSSGS  660
ILGRRNGGRK LILQSIPSFP SLTPHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-17	391	509	14	120	Protein lin-54 homolog
5fd3_B	4e-17	391	509	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	376	KKKRR
2	372	377	KKKRRK
3	373	377	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010532575.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010532575.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_010532574.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]