PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532504.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family FAR1
Protein Properties Length: 844aa    MW: 97072.4 Da    PI: 7.3791
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.43.7e-2688190191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerr....traetrtgCkaklkvkkekdgkwevt 79 
                     +fY+eYA+ +GF++ +++s++sk+++e+++++f Cs++g+++e +k+                 +    +ra  +t+Cka+++vk++ dgkw ++
  XP_010532504.1  88 SFYQEYARAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSfnkprvsqnkqeP----EnmagRRACGKTDCKASMHVKRRPDGKWIIH 178
                     5*******************************************99999**988754433....2345589999********************* PP

            FAR1  80 kleleHnHelap 91 
                     +++ eHnHel p
  XP_010532504.1 179 SFVREHNHELLP 190
                     *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-2488190IPR004330FAR1 DNA binding domain
PfamPF105513.4E-26288380IPR018289MULE transposase domain
PROSITE profilePS509669.446568604IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-4577603IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-8579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MDINLRLPSG DQSKEDGEER GIDNVLEDEH KLHNGDMEIG KMEDVTVEVQ ADDSVGMVPT  60
AELVEYKEGM NLEPLNGMEF ESHSEAYSFY QEYARAMGFN TAIQNSRRSK TTREFIDAKF  120
ACSRYGTKRE YDKSFNKPRV SQNKQEPENM AGRRACGKTD CKASMHVKRR PDGKWIIHSF  180
VREHNHELLP AQAVSEQTRK IYAAMARQFA EYKTVISLNN NTKSSFEKGR NSAVETGDIK  240
ILLDFLSRMQ SMNSNFFYAV DLGDDQQLKT VFWVDAKSRH DYGSFCDVVS LDTTYVRNKY  300
RMPLAIFVGV NQHYQFMVLG CAVISDESAT TFSWIMHTWL KAMGGLAPKV IITEQDSVMN  360
SVVPEVFPNT RHCFFLWHVL VKVSENLGQV IKQHDNFTPK FEKCIYKSWR DEDFARRWWK  420
ILDRFGLKED QWMQSLYEDC RKWVPAYMTD VLLAGMSTSQ RTDSINAFFD KYLHKKTSVQ  480
EFVKLYDAIL QDRYEEEAKA DSDAWNKQPT MKSPSPFEKS VSEIYTPAVF RKFQVEVLGA  540
IACSPREENR DGTCFIFRVQ DFEKNQDFVV TWNQTKSQVS CICRLFEYKG YLCRHALNVL  600
QRCHLSSIPS RYILKRWTKD AKNRDFTGEP ERLQTRLQRY NDLCRRALKL SEEASFSQES  660
YNIAYRAIEE ALENCAGVNT AGKSPQELVT SPTQGLISVE EDNQSRSTGK TSKKKNPTKK  720
RKVNSEQEVM PVGAPENMQQ MDKLSPRTVS IESYYATQPS VQGMVQLNLM APTRESFYGN  780
QQIQGLGQLN SIASSHGSYY SAQQGIPEMS GLDFFRPSAF SYDIRDDPNV RTAQLHNNAS  840
RHPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532504.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532502.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_010532503.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_010532504.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_019057594.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_019057595.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A1J3CXP80.0A0A1J3CXP8_NOCCA; Protein FAR-RED ELONGATED HYPOCOTYL 3
STRINGXP_010532502.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3
Publications ? help Back to Top
  1. Chang N,Gao Y,Zhao L,Liu X,Gao H
    Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel.
    Sci Rep, 2015. 5: p. 9612
    [PMID:25872642]
  2. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  3. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  4. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  5. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  6. Li D, et al.
    FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80
    [PMID:27469166]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]