PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010532501.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 838aa MW: 97276.3 Da PI: 7.3941

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010532501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.8	3.3e-27	77	164	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+++ ++t+Cka+++vk++ dgkw ++++ + HnHel p XP_010532501.1 77 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESG---NSRRSSLKKTDCKASMHVKRRPDGKWIIHEFIKGHNHELLP 164 5*************************************9998877...889999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-24	77	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-26	285	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.099	565	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-7	566	600	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-7	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MRRILVNPNV ADFRMDSQEN RVNGNGDENM VDIVDESQNR DVGNVHDPKA GGLGTSGDVD 60 LEPRDGIEFD SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK TKEFIDAKFA CSRYGVTPES 120 ESGNSRRSSL KKTDCKASMH VKRRPDGKWI IHEFIKGHNH ELLPALAYHF RIQRNVKLAE 180 KNNIDILHAV SERTKKMYVE MSRHSGGLKK IELPQSEIDS QLDDMGRYLV MEEGDSQVML 240 EYFKRIKKEN PKFFYAIDLN EEQRLRNLCW VDAKSRDDYT SFSDVVSFDT TYVKFNEKLP 300 LALFVGVNHH FQPMLLGSAL VADESKETFV WLLKTWLRAM GGRAPKVILT DQDKVLMAAI 360 SEVLPNTHHC FALWHVLEKI PESFSHVMKR HENFLRKFNK CVFRSWTDDQ FDMRWWKMVT 420 RFELQDDEWI QWLYEHRKKW VPTFMSNVFL AGMSTSPRSE SMNSFFDKYI HKKIRLREFI 480 KQYGAILQNR YEEESVADFD TWHKQPALKS PSPWEKQVSA VYTHTIFKKF QVEVLGVVAC 540 HPKKESEDET MLTFRVQDCE KEDEFLVTWN KANSELCCFC RMFEYKGFLC RHALMVLQIC 600 GFPSIPPQYV LKRWTKDAKS RQPSEEVTDQ FQTGRVQRYN DLCRRAIELS EEGCLSEENY 660 NIVLRTLVET LKNCVDLNNS RSNILESNSQ PHNPGEEENQ AIASAKSSKK KTIVRKRKGQ 720 PEADQMLIEP QPNLQQMDNL SSEGMNLNGF YGTQQNVQGL LNLMEPPHEG YFVNQRSIQG 780 LGQLNSIAPV HESFFTNQQA IPGLAQLDFR PPPTSFSYIQ DEHHLRSAQL PSSSSRHI

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MRRILVNPNV ADFRMDSQEN RVNGNGDENM VDIVDESQNR DVGNVHDPKA GGLGTSGDVD  60
LEPRDGIEFD SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK TKEFIDAKFA CSRYGVTPES  120
ESGNSRRSSL KKTDCKASMH VKRRPDGKWI IHEFIKGHNH ELLPALAYHF RIQRNVKLAE  180
KNNIDILHAV SERTKKMYVE MSRHSGGLKK IELPQSEIDS QLDDMGRYLV MEEGDSQVML  240
EYFKRIKKEN PKFFYAIDLN EEQRLRNLCW VDAKSRDDYT SFSDVVSFDT TYVKFNEKLP  300
LALFVGVNHH FQPMLLGSAL VADESKETFV WLLKTWLRAM GGRAPKVILT DQDKVLMAAI  360
SEVLPNTHHC FALWHVLEKI PESFSHVMKR HENFLRKFNK CVFRSWTDDQ FDMRWWKMVT  420
RFELQDDEWI QWLYEHRKKW VPTFMSNVFL AGMSTSPRSE SMNSFFDKYI HKKIRLREFI  480
KQYGAILQNR YEEESVADFD TWHKQPALKS PSPWEKQVSA VYTHTIFKKF QVEVLGVVAC  540
HPKKESEDET MLTFRVQDCE KEDEFLVTWN KANSELCCFC RMFEYKGFLC RHALMVLQIC  600
GFPSIPPQYV LKRWTKDAKS RQPSEEVTDQ FQTGRVQRYN DLCRRAIELS EEGCLSEENY  660
NIVLRTLVET LKNCVDLNNS RSNILESNSQ PHNPGEEENQ AIASAKSSKK KTIVRKRKGQ  720
PEADQMLIEP QPNLQQMDNL SSEGMNLNGF YGTQQNVQGL LNLMEPPHEG YFVNQRSIQG  780
LGQLNSIAPV HESFFTNQQA IPGLAQLDFR PPPTSFSYIQ DEHHLRSAQL PSSSSRHI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010532501.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010532500.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_010532501.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1J3EF67	0.0	A0A1J3EF67_NOCCA; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1J3JL92	0.0	A0A1J3JL92_NOCCA; Protein FAR-RED IMPAIRED RESPONSE 1
STRING	XP_010532500.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]