PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010532432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25570.8 Da PI: 8.7185 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.8e-18 | 126 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f vl ps+ + ++++lp fae++ +g+ + ++l+l d ++W v++ k gr +++GW eF +n+L egD++vF+l ++++f l+v XP_010532432.1 126 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGI-SGFIKLQLAD---KQWPVRC--LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKV 214 678899********************8444.3656777666...*******..666666779************************99******* PP EEE-S CS B3 95 kvfrk 99 ++fr XP_010532432.1 215 TAFRV 219 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-23 | 118 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-22 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.63E-22 | 124 | 218 | No hit | No description |
PROSITE profile | PS50863 | 12.943 | 126 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-22 | 126 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-16 | 126 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDSHNHFKRA RLFEDLEDED AEVMYPSSVY PMADSAPVNK GYASSTIQSL FSGSRAEETS 60 KVPKKRGRKK KNPDPEEINS APHEDDSENR SKFYESASAR KRTVTAEERE RAINAAKTFE 120 PVNPFFRVVL RPSYLYRGCI MYLPSGFAEK YLSGISGFIK LQLADKQWPV RCLYKAGRAK 180 FSQGWYEFTL ENNLGEGDVC VFELLRTRDF VLKVTAFRVN EYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-92 | 92 | 223 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-92 | 92 | 223 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010532432.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010532431.1 | 1e-164 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Refseq | XP_019057531.1 | 1e-164 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-139 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | E4MXM2 | 1e-137 | E4MXM2_EUTHA; mRNA, clone: RTFL01-34-E14 | ||||
TrEMBL | V4M6R9 | 1e-137 | V4M6R9_EUTSA; Uncharacterized protein | ||||
STRING | XP_010532431.1 | 1e-164 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-132 | B3 family protein |
Publications ? help Back to Top | |||
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