PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532368.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 405aa    MW: 46807.6 Da    PI: 5.785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-19213259148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
   XP_010532368.1 213 KGQWTVEEDRILIQLVEQYGLRKWSHIAQMLP-GRIGKQCRERWHNHL 259
                      799*****************************.*************97 PP
2Myb_DNA-binding57.23.9e-18265307145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W+++Ed++l++a+k+ G++ W+ I+++++ gRt++++k++w+
   XP_010532368.1 265 KETWSEDEDKILIEAHKEIGNK-WAEIMKRLP-GRTENSIKNHWN 307
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.066208263IPR017930Myb domain
SuperFamilySSF466891.39E-31211306IPR009057Homeodomain-like
SMARTSM007173.6E-18212261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-28214266IPR009057Homeodomain-like
CDDcd001671.22E-16216259No hitNo description
PfamPF139218.3E-20216273No hitNo description
PROSITE profilePS5129419.701264314IPR017930Myb domain
SMARTSM007171.3E-15264312IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-21267312IPR009057Homeodomain-like
CDDcd001674.13E-12267310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MENFDESDFP VSQTLFLTEE EQQHMKPQES VEEDEDFPFE IPNQSKPTNF LQDFHHLDPF  60
NVDGSSSNPL FGVQTACNDP FEPYPYVCSS AEDIGSYESK PFSDSLNVIG GGRVMNKYQT  120
GENNPYFGNI PRLFDHRIPE QSNMMMMTTA MMMTIPFDYH ADVIKPVNFV IPDEVSCVSA  180
ENNSHNAGGG LDKSRAFPTR KSWKGRKRST VVKGQWTVEE DRILIQLVEQ YGLRKWSHIA  240
QMLPGRIGKQ CRERWHNHLR PDIKKETWSE DEDKILIEAH KEIGNKWAEI MKRLPGRTEN  300
SIKNHWNATK RRQFSKRKCR SKFPRPSLLQ DYIKSLNLDA SSSSIPARGR RKHKKKNEKE  360
PEEMEEGQGL YDFGFDEKML EEGCSIDSLL DDIPLTDMDA FVHGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-442113132104C-Myb DNA-Binding Domain
1msf_C1e-442113132104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532368.10.0PREDICTED: transcription factor MYB98
SwissprotQ9S7L21e-143MYB98_ARATH; Transcription factor MYB98
TrEMBLM4DA361e-155M4DA36_BRARP; Uncharacterized protein
STRINGXP_010532368.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-139myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]