PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532345.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 301aa    MW: 34352.1 Da    PI: 4.9767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll +++ + G g+W+ +a++ g++Rt+k+c++rw++yl
   XP_010532345.1 21 RGPWTLEEDTLLTNYISLNGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding49.21.2e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+  ++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010532345.1  74 RGNLNPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                      678889****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6931668IPR017930Myb domain
SuperFamilySSF466897.19E-3019115IPR009057Homeodomain-like
SMARTSM007171.6E-142070IPR001005SANT/Myb domain
PfamPF002492.6E-152168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-222275IPR009057Homeodomain-like
CDDcd001671.24E-102368No hitNo description
PROSITE profilePS5129424.66869123IPR017930Myb domain
SMARTSM007171.9E-1473121IPR001005SANT/Myb domain
PfamPF002491.3E-1474117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2276122IPR009057Homeodomain-like
CDDcd001679.12E-1178117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPRSMKKSFE ANETEEAELR RGPWTLEEDT LLTNYISLNG EGRWNMVAKC AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLNPQ EQLLILELHS KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARQLNIES NSEKFFDAVR SFWMPRLVEK MEQNSSSNSA ASCSSQLNSN NANTINGPEF  180
LSSESLMNSV RPDSDGFPND SGFSDINCSS SMADLVAITR LMDMSDQNTA GSVQFQLHGG  240
SQCVSEEEEY GHFHGFDDYM ASMGNLDISS AGYHVANADS MYEDVTQDPM WNMDDIWHFR  300
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23181231105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-231812324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532345.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532345.10.0PREDICTED: myb-related protein 340-like
SwissprotQ9C9G71e-119MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A087HGJ01e-119A0A087HGJ0_ARAAL; Uncharacterized protein
STRINGXP_010532345.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-116myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]