PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532040.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 354aa    MW: 40669.2 Da    PI: 7.8761
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94.1e-53111401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+ +yLkkkv+ ++++l +vi+evd++k+ePw+L++  ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_010532040.1  11 VPPGFRFHPTEEELLYYYLKKKVSYEPIDL-DVIREVDLNKLEPWELKErcRIGSgHQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 104
                     69****************************.9***************953444443666************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++++gl+ktLvfy+grap+g+ktdW+mheyrl
  XP_010532040.1 105 HMSTSKKIGLRKTLVFYTGRAPHGHKTDWIMHEYRL 140
                     **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-587160IPR003441NAC domain
PROSITE profilePS5100557.60411160IPR003441NAC domain
PfamPF023654.6E-2712140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDIGSSGQLS VPPGFRFHPT EEELLYYYLK KKVSYEPIDL DVIREVDLNK LEPWELKERC  60
RIGSGHQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIHMSTSK KIGLRKTLVF  120
YTGRAPHGHK TDWIMHEYRL DDSHNDIQEE GWVVCRVFKK KAHFRGFLQE TPDQEDHPHR  180
YTTTTHDDDH HHHHHHMNPN PCNPSSFPHP IDHHHHTITR RTGLQPLYGF PNTFSHQQSS  240
MHLPQLLCPE TAAVTAHPFS TTDLECSQNL LRLTSNNNYG GDWSFLDKLL TSSATIPQQQ  300
TQAKSLVGPS NGDNNNNQTA GNQHHDVGSN AGSVSQRFPF QYLGHEVNLL KFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-49816214167NO APICAL MERISTEM PROTEIN
1ut4_B2e-49816214167NO APICAL MERISTEM PROTEIN
1ut7_A2e-49816214167NO APICAL MERISTEM PROTEIN
1ut7_B2e-49816214167NO APICAL MERISTEM PROTEIN
3swm_A2e-49816217170NAC domain-containing protein 19
3swm_B2e-49816217170NAC domain-containing protein 19
3swm_C2e-49816217170NAC domain-containing protein 19
3swm_D2e-49816217170NAC domain-containing protein 19
3swp_A2e-49816217170NAC domain-containing protein 19
3swp_B2e-49816217170NAC domain-containing protein 19
3swp_C2e-49816217170NAC domain-containing protein 19
3swp_D2e-49816217170NAC domain-containing protein 19
4dul_A2e-49816214167NAC domain-containing protein 19
4dul_B2e-49816214167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107935e-39AC010793.3 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I, complete sequence.
GenBankCP0026845e-39CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532040.10.0PREDICTED: protein SOMBRERO-like
RefseqXP_010532041.10.0PREDICTED: protein SOMBRERO-like
SwissprotQ9MA171e-148SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0D3CVS71e-163A0A0D3CVS7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FWE51e-163A0A3P6FWE5_BRAOL; Uncharacterized protein
STRINGXP_010532040.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66532542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-120NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]