PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531988.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 301aa    MW: 33632.2 Da    PI: 4.7462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+teEd +l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_010531988.1 16 RGPWSTEEDMKLISFIHKHGHENWRSLPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP

2Myb_DNA-binding551.9e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
   XP_010531988.1  69 RGNFTAEEEETIIKLHRSFGNK-WSKIASHLP-GRTDNEIKNVWHTHL 114
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24766IPR009057Homeodomain-like
PROSITE profilePS5129414.7161163IPR017930Myb domain
SuperFamilySSF466896.97E-3014110IPR009057Homeodomain-like
SMARTSM007172.0E-131565IPR001005SANT/Myb domain
PfamPF002497.2E-161663IPR001005SANT/Myb domain
CDDcd001677.56E-101863No hitNo description
PROSITE profilePS5129426.96964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-2867119IPR009057Homeodomain-like
SMARTSM007177.5E-1668116IPR001005SANT/Myb domain
PfamPF002497.5E-1669114IPR001005SANT/Myb domain
CDDcd001678.33E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGKGRAPCCD KTKVKRGPWS TEEDMKLISF IHKHGHENWR SLPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHRSFGNK WSKIASHLPG RTDNEIKNVW HTHLKKRLVQ  120
SSGPDLHADE SASSCSGGSV SGEKPEGGKE PEGSLAEKVS HESSLSELTS SSTSSGGSNV  180
INPEDDLQMG GLLGYIEGYS GNSDMFQEVD KPDMLEIPFD SDPDIWSLLE DCLDASQEPD  240
ADGNSLLASR AEESEEVKQW FKYIENELLL EEDDNQKHKP GTTGEEEEES SLLKTYELMI  300
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25161187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531988.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531988.10.0PREDICTED: myb-related protein Myb4
SwissprotQ6R0A61e-121MYB63_ARATH; Transcription factor MYB63
TrEMBLD7KVY91e-125D7KVY9_ARALL; Uncharacterized protein
STRINGXP_010531988.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.14e-98myb domain protein 63
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]