PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010531988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 33632.2 Da PI: 4.7462 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+teEd +l+ ++++G ++W++ ++ g+ R++k+c++rw +yl XP_010531988.1 16 RGPWSTEEDMKLISFIHKHGHENWRSLPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l XP_010531988.1 69 RGNFTAEEEETIIKLHRSFGNK-WSKIASHLP-GRTDNEIKNVWHTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.716 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.56E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.969 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-28 | 67 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.33E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MGKGRAPCCD KTKVKRGPWS TEEDMKLISF IHKHGHENWR SLPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IKLHRSFGNK WSKIASHLPG RTDNEIKNVW HTHLKKRLVQ 120 SSGPDLHADE SASSCSGGSV SGEKPEGGKE PEGSLAEKVS HESSLSELTS SSTSSGGSNV 180 INPEDDLQMG GLLGYIEGYS GNSDMFQEVD KPDMLEIPFD SDPDIWSLLE DCLDASQEPD 240 ADGNSLLASR AEESEEVKQW FKYIENELLL EEDDNQKHKP GTTGEEEEES SLLKTYELMI 300 H |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 16 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010531988.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010531988.1 | 0.0 | PREDICTED: myb-related protein Myb4 | ||||
Swissprot | Q6R0A6 | 1e-121 | MYB63_ARATH; Transcription factor MYB63 | ||||
TrEMBL | D7KVY9 | 1e-125 | D7KVY9_ARALL; Uncharacterized protein | ||||
STRING | XP_010531988.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79180.1 | 4e-98 | myb domain protein 63 |
Publications ? help Back to Top | |||
---|---|---|---|
|