PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010531914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | STAT | ||||||||
Protein Properties | Length: 689aa MW: 77776.9 Da PI: 5.481 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 186.3 | 3.7e-58 | 226 | 342 | 1 | 117 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldv+l+na+g+ ++kdv+vvasLly dsg++ve+++++eapLL+s +Gvefs+ drp+kll+Gra+fklkisqLssk+dnrLf+ikfeip++k y XP_010531914.1 226 LDVILSNAVGHHARKDVQVVASLLYVDSGTPVEQTNETEAPLLASHEGVEFSAGDRPIKLLNGRATFKLKISQLSSKSDNRLFCIKFEIPNVKGY 320 8********************************************************************************************** PP STAT 96 pfleavskpirCisrsrntrss 117 pfleav++pirCisrsr+t ++ XP_010531914.1 321 PFLEAVTNPIRCISRSRDTMPK 342 *****************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 3.7E-4 | 25 | 151 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 1.06E-6 | 28 | 165 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 6.87E-61 | 584 | 689 | No hit | No description |
SuperFamily | SSF55550 | 8.42E-10 | 592 | 653 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 1.2E-6 | 592 | 642 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.307 | 595 | 689 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MEGDCLIDTD KYSLLEDFNV DVEVQDEDFE AFSLCFWVYL FNSTTFPSTI IRQVHSAMSV 60 SAPFLVLDEN KNMMLLPLTL LHKEAPDPVN TASWTEVPSV STKAEFPLEK WVHVGCEVSR 120 HYMRLHINGD IVGEQLLTSL LPKDTNPEFP GKISLFSVGG DGYSVQGFIQ CAEVLPASVP 180 VTCHYVKDPP LWLSVDKPST SGIELDDDGV WSIVGGKASC RRIFSLDVIL SNAVGHHARK 240 DVQVVASLLY VDSGTPVEQT NETEAPLLAS HEGVEFSAGD RPIKLLNGRA TFKLKISQLS 300 SKSDNRLFCI KFEIPNVKGY PFLEAVTNPI RCISRSRDTM PKRVNHVDHP VGGVPTLVSS 360 NTSPDLHYDA SSVKRVRLGE ERISDREEPV QQHNSLTQAS RQFENGNGMS MEWRPQNNEE 420 ENSSTDSDSA EMRDSVFRRY TISDSTIFRY CLGNLAERSL LLKEITNNSS DEEVSEFADQ 480 VSLYSGCSHH GNQIKMARKL IAEGTNAWML ISRNNQHVHW HSAVCEIEEH FMRIAQCSSR 540 SLTQQDFELL RRISGCYEYM TQENFEKMWC WLFPVAKSIS RGLINGMWRS VSPKWIEGFI 600 TKEDAEISLQ GQEPGTFILR FPTLRSWPHP DAGSLVVTYV GHDFSIRHRL LTLDHISNPR 660 ESYMDAKPLQ DMLLAEPELS RLGRIIRSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010531914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010531914.1 | 0.0 | PREDICTED: uncharacterized protein LOC104808083 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | V4KYL3 | 0.0 | V4KYL3_EUTSA; Uncharacterized protein | ||||
STRING | XP_010531914.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Publications ? help Back to Top | |||
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