PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531870.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 543aa    MW: 60347.8 Da    PI: 8.4076
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-08440488348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E  +lv++v+++G g W+ I r        Rt  ++k++w+++l
   XP_010531870.1 440 AWSLSEVIKLVEGVAKYGAGKWSEIKRLSFashSYRTSVDLKDKWRNLL 488
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.903433492IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-13434494IPR009057Homeodomain-like
SuperFamilySSF466899.36E-16435496IPR009057Homeodomain-like
SMARTSM007174.9E-9437490IPR001005SANT/Myb domain
CDDcd116602.21E-19439489No hitNo description
PfamPF002492.9E-6440488IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MLATNLGLSQ SDNTEASPDK LASQLEYTVE MLQRVEEEVR LCMAHEPQML SACSDANIQC  60
SNESNKLFSS DVKVQSETLL QDLTQDQNGC GSNQQMKAEP CLNVVGSPQE AVFSTSAQKP  120
DFSTVRGDIC LDNLSIKALH ETFRATFGRE TTVKDKLWLK RRIAMGLLNS CYVSTTCLTI  180
KDNKLIGGQK ENFNCLNDDF SKDVVDEIRV DDSNKEAASG PSDQIDGFAS ASGDSSMDNF  240
GNHECGGEDF ASEHRAEKRQ RKPTRRYIEE LSDTDDRQRS GKSMNPSKNQ RLSPKSQIKT  300
IRAVSSGGRL VITRVVYLAG SRMQVPFVFQ TRRGRPRENI MALVDIQPGW LEEKATPAGN  360
SQRLSPSQLN GDNVNGGLII KSAFEHGQKE SKNEHSNSVP TVLDRDMEPE QVELSGNSSD  420
ENHVGMPTFN SALRRKHHRA WSLSEVIKLV EGVAKYGAGK WSEIKRLSFA SHSYRTSVDL  480
KDKWRNLLKA SFSQTPSKRM GSMRKHGSTP IPTPILLRVR ELAEKQSQVP AVSKAKDKRT  540
GFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531868.10.0PREDICTED: uncharacterized protein LOC104808052 isoform X1
TrEMBLF4IDF10.0F4IDF1_ARATH; TRF-like 6
STRINGXP_010531868.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6