PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531869.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 595aa    MW: 66000.8 Da    PI: 6.7976
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08492540348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E  +lv++v+++G g W+ I r        Rt  ++k++w+++l
   XP_010531869.1 492 AWSLSEVIKLVEGVAKYGAGKWSEIKRLSFashSYRTSVDLKDKWRNLL 540
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.903485544IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-13486546IPR009057Homeodomain-like
SuperFamilySSF466891.09E-15487548IPR009057Homeodomain-like
SMARTSM007174.9E-9489542IPR001005SANT/Myb domain
CDDcd116602.98E-19491541No hitNo description
PfamPF002493.3E-6492540IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MRLSASDNGM FSDNSAQTMG TSFSLTKQSG NPVKYKLVRV AGDGRLVPAT DEEIIEVEDL  60
LENDETDMHI VTHTGQTVED ISDDRLPSRL PLLESSEATN LGLSQSDNTE ASPDKLASQL  120
EYTVEMLQRV EEEDLTQDQN GCGSNQQMKA EPCLNVVGSP QEAVFSTSAQ KPDFSTVRGD  180
ICLDNLSIKA LHETFRATFG RETTVKDKLW LKRRIAMGLL NSCYVSTTCL TIKDNKLIGG  240
QKENFNCLND DFSKDVVDEI RVDDSNKEAA SGPSDQIDGF ASASGDSSMD NFGNHECGGE  300
DFASEHRAEK RQRKPTRRYI EELSDTDDRQ RSGKSMNPSK NQRLSPKSQI KTIRAVSSGG  360
RLVITRVVYL AGSRMQVPFV FQTRRGRPRE NIMALVDIQP GWLEEKATPA GNSQRLSPSQ  420
LNGDNVNGGL IIKSAFEHGQ KESKNEHSNS VPTVLDRDME PEQVELSGNS SDENHVGMPT  480
FNSALRRKHH RAWSLSEVIK LVEGVAKYGA GKWSEIKRLS FASHSYRTSV DLKDKWRNLL  540
KASFSQTPSK RMGSMRKHGS TPIPTPILLR VRELAEKQSQ VPAVSKAKDK RTGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057515.10.0PREDICTED: uncharacterized protein LOC104808052 isoform X2
TrEMBLV4KKV40.0V4KKV4_EUTSA; Uncharacterized protein
STRINGXP_010531868.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6