PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531864.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 290aa    MW: 31399.4 Da    PI: 9.3597
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.3e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r        ++R+  ++k++w+++
   XP_010531864.1  5 KQKWTPEEEEALLAGVAKHGPGKWKNILRDPDfaaqlTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.012162IPR017930Myb domain
SuperFamilySSF466898.61E-17267IPR009057Homeodomain-like
SMARTSM007178.8E-9459IPR001005SANT/Myb domain
PfamPF002491.5E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-15556IPR009057Homeodomain-like
CDDcd116603.91E-21656No hitNo description
SuperFamilySSF467853.86E-13126207IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-11126191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-9127199IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.656128196IPR005818Linker histone H1/H5, domain H15
PfamPF005385.9E-8130188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGNQKQKWTP EEEEALLAGV AKHGPGKWKN ILRDPDFAAQ LTHRSNIDLK DKWRNLSVAP  60
GTQGSKDKIR TPKLKAAAAA VMAAAAAAAT GTATPTTHSS PAASLPHSAS SDLSMDDNSL  120
NVSVDAKNTP RYDGMIFEAL SSVSDANGSD ISAIVSFIAK KHEVPLNFRR ILGSRLRRLA  180
AQGKLEKAQS FYKISDPSGT RSPAQRQKET NLKHRQSNSQ SPAVSQEMVE EAAITAAYKV  240
VEAENKVDVA KGAVEELERM TRMAEDTEVF LEIAKEIHER CSRGEVVLLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531864.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531864.10.0PREDICTED: telomere repeat-binding factor 4-like isoform X2
SwissprotF4I7L11e-119TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLV4K9Z41e-129V4K9Z4_EUTSA; Uncharacterized protein
STRINGXP_010531863.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-111MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]