PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531778.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 360aa    MW: 40374.7 Da    PI: 6.9109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-1599144147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+q+G+ +W++Ia+ +  +R++k+c++rw++ 
   XP_010531778.1  99 RGHWRPAEDAKLRELVAQFGPQNWNLIAEQLA-RRSGKSCRLRWFNQ 144
                      899*****************************.***********996 PP
2Myb_DNA-binding55.41.4e-17152194246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++T+eE+e+l+ +++++G++ W++I++ ++ gRt++ +k++w+ 
   XP_010531778.1 152 RPFTEEEEERLLALHRLYGNR-WALISKFFP-GRTDNAVKNHWHV 194
                      69*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2694145IPR017930Myb domain
SMARTSM007173.7E-1398147IPR001005SANT/Myb domain
SuperFamilySSF466897.7E-2999192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-26100152IPR009057Homeodomain-like
PfamPF139211.2E-15102162No hitNo description
CDDcd001679.63E-12102143No hitNo description
PROSITE profilePS5129427.599146200IPR017930Myb domain
SMARTSM007175.8E-16150198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-21153200IPR009057Homeodomain-like
CDDcd001677.12E-8153193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNNLENPNSS AIVKEMNFLP ICPSGQRQDE EPWNSTGGNA DQTEAGFLSL AENSREEQEI  60
DIEGGEGEGE EEEEEGEREI KRKKKRKRHS GEKQKLCARG HWRPAEDAKL RELVAQFGPQ  120
NWNLIAEQLA RRSGKSCRLR WFNQLDPRII KRPFTEEEEE RLLALHRLYG NRWALISKFF  180
PGRTDNAVKN HWHVIMARKI RQRHSTSALN SRRRPSHNIM NSSSNNDNNN ANTAFAKGID  240
VISQAAAEAD ESVSACTDLS LSPSSSSSAR ARKGFFFFHE GSAQFHHYKG ESEVRIRNVN  300
ADKLIDKNGS EAVGKVDQST QSDSNSELSG APSHEITNLP SGPAPLVCPF IDFLGLGRDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29992007108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187RKKKRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531778.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531778.10.0PREDICTED: transcription factor LAF1-like isoform X2
SwissprotQ6R0532e-64MYB56_ARATH; Transcription factor MYB56
TrEMBLA0A2C9VGI03e-79A0A2C9VGI0_MANES; Uncharacterized protein
STRINGXP_010531777.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-59myb domain protein 56
Publications ? help Back to Top
  1. Chen L,Bernhardt A,Lee J,Hellmann H
    Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases.
    Mol Plant, 2015.
    [PMID:25343985]
  2. Frigola D,Caño-Delgado AI,Ibañes M
    Methods for Modeling Brassinosteroid-Mediated Signaling in Plant Development.
    Methods Mol. Biol., 2017. 1564: p. 103-120
    [PMID:28124249]
  3. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  4. Jeong CY, et al.
    AtMyb56 Regulates Anthocyanin Levels via the Modulation of AtGPT2 Expression in Response to Sucrose in Arabidopsis.
    Mol. Cells, 2018. 41(4): p. 351-361
    [PMID:29487277]