PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010531767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 222aa MW: 25009.8 Da PI: 8.5136 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 64.7 | 3.4e-20 | 1 | 113 | 22 | 132 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaa.kskksqksaasalnlak 112 +Rls +a +fF Lqd LGfdk s ti WLl ++++i +l g+ s + + ++++ ++n++ + ++ ++ +++++++ + k XP_010531767.1 1 MRLSTVVAHKFFHLQDLLGFDKGSMTIAWLLSVSEASIMQLLGSVSAPRHGG--GQEHGYVGNETVEleaQEGTAGIrRTRRRTTKIVQRPTRTK 93 8*******************************************55555333..33333333333334222233333233333444444455566 PP TCP 113 esrakarararertrekmri 132 esr++ar rarert k r+ XP_010531767.1 94 ESRNEARRRARERTMTKRRN 113 **************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 17.826 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.4E-15 | 1 | 112 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 9.268 | 93 | 110 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MRLSTVVAHK FFHLQDLLGF DKGSMTIAWL LSVSEASIMQ LLGSVSAPRH GGGQEHGYVG 60 NETVELEAQE GTAGIRRTRR RTTKIVQRPT RTKESRNEAR RRARERTMTK RRNIRSGSAF 120 GMMSGAFCHR QETNSDDSGR QLGSHGTSKE TQEDLCPNWS QETRLDMEEQ SQEQGLLNFL 180 ECQMDALRSI EKFLGIDSES SYSSISGDST RKNSEESHRV LP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010531767.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010531767.1 | 1e-164 | PREDICTED: transcription factor TCP12 | ||||
Refseq | XP_019056460.1 | 1e-162 | PREDICTED: transcription factor TCP12-like | ||||
STRING | XP_010531767.1 | 1e-163 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-14 | TCP domain protein 12 |