PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531649.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 549aa    MW: 62086 Da    PI: 7.0083
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.62e-2936119186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++qe+laL+++r++m+ ++r+++ k+plW evs+km+e g++rs+k+Ckek+en+ k++k++keg++++++++  t+++fdql+
  XP_010531649.1  36 RWPRQETLALLKIRSDMDIAFRDASVKGPLWGEVSRKMAELGYNRSAKKCKEKFENVYKYHKRTKEGRNGKSEGK--TYRFFDQLQ 119
                     8********************************************************************975544..6******98 PP
2trihelix107.21.1e-33367452187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+ gf+rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_010531649.1 367 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 452
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00453395IPR001005SANT/Myb domain
PROSITE profilePS500906.8293593IPR017877Myb-like domain
CDDcd122031.71E-2435100No hitNo description
PfamPF138373.7E-1935121No hitNo description
SMARTSM007172.9E-4364426IPR001005SANT/Myb domain
PROSITE profilePS500907.282366424IPR017877Myb-like domain
PfamPF138379.5E-23366453No hitNo description
CDDcd122032.07E-28366431No hitNo description
Gene3DG3DSA:1.10.10.606.9E-4366423IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
PPPAVTAATP QTNDAAAGPN LEGSEEMSDR GFGGNRWPRQ ETLALLKIRS DMDIAFRDAS  60
VKGPLWGEVS RKMAELGYNR SAKKCKEKFE NVYKYHKRTK EGRNGKSEGK TYRFFDQLQA  120
LESQSHHLHQ QETQTQMPPR PHNHINHSLL FSETQSQPTA NADNTPPGIA VTTVTSTMPT  180
PNITPPLTQP VSASTFPSIS GDFLSDWTSS PSSSSSTSSD VEIGGGTRKK RKRKWKEFFE  240
GLMKQVVEKQ EELQCRFLEA VEKREHERMV REEAWTMQEM ARINREREIL AQERSMAAAK  300
DAAVMAFLQK LSENPNLSQS KQFPSPQTQT PQQQQQPPPQ QQPQPQPPVV TKTDNGERNL  360
VGPSSSRWPK VEIEALIKLR TNLDSKYQEN GPKGPLWEEI SAGMRRLGFN RSSKRCKEKW  420
ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYREKNVA STSSTSTSTG HMMPENAVPL  480
MVQPEQQWPP APPPQRQVED KDQGKNFGRN PDHHHDEGDA DGNEDDEEQD EEEDGGEFEI  540
VPSNNSKGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232RKKRKR
2227233RKKRKRK
3228233KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531649.20.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-144TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTX90.0D7KTX9_ARALL; Uncharacterized protein
STRINGXP_010531649.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein