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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_010531487.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 296aa MW: 32969.4 Da PI: 9.238 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010531487.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 317.8 | 3.3e-97 | 1 | 296 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75
md+ g+ e + k+ yy+ ++++l +++++ms++aerda+++ern als+k++a+a+rd+a++qrdkal+er++al+
XP_010531487.1 1 MDSGGQCEngKYKPnYYKgthsmtwnmmpqhqikeQHNALV--MNKKIMSILAERDAAVQERNEALSAKREALAARDEALQQRDKALSERDNALM 93
77777776677788788899999999998777754446666..99************************************************** PP
GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
erdn+l+al+++ sl + p +++ + ++ i++ + e+ ++ea+pi++ + ea +k +k ++++kp ++k k k
XP_010531487.1 94 ERDNALAALQYRGSSL--NFPLSCGKRDMVEAINT--------------GEGETLISEAFPISTIPAEAASSKLTK--RKESKPVRSKGK---KV 167
***********98875..45666766665555552..............344666778999999999888888777..344444444444...44 PP
GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
+e+ +++ ++ + ++ +++++s d++ln v++De+t+PvPvC+CtG+ +qCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f
XP_010531487.1 168 GEDLNQRAASLG--KKCRTDWESCDVGLNLVAFDETTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGSVF 260
456655555555..679****************************************************************************** PP
GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++lL++LaaeG+dls pvDLkd+WA+HGtn+++ti+
XP_010531487.1 261 TRLLSRLAAEGHDLSFPVDLKDYWARHGTNRYITIK 296
***********************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MDSGGQCENG KYKPNYYKGT HSMTWNMMPQ HQIKEQHNAL VMNKKIMSIL AERDAAVQER 60
NEALSAKREA LAARDEALQQ RDKALSERDN ALMERDNALA ALQYRGSSLN FPLSCGKRDM 120
VEAINTGEGE TLISEAFPIS TIPAEAASSK LTKRKESKPV RSKGKKVGED LNQRAASLGK 180
KCRTDWESCD VGLNLVAFDE TTMPVPVCTC TGSAHQCYKW GNGGWQSSCC TTTLSQYPLP 240
QMPNKRHSRM GGRKMSGSVF TRLLSRLAAE GHDLSFPVDL KDYWARHGTN RYITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
