PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531386.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 292aa    MW: 32537.7 Da    PI: 6.2618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-21110160256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  XP_010531386.1 110 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAAMAYDQAAYKLRGE 160
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.49E-35109169No hitNo description
PROSITE profilePS5103223.538110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-33110168IPR001471AP2/ERF domain
SMARTSM003808.6E-40110173IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-23110168IPR016177DNA-binding domain
PfamPF008471.7E-14111160IPR001471AP2/ERF domain
PRINTSPR003672.8E-11111122IPR001471AP2/ERF domain
PRINTSPR003672.8E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAAIDMSDSK ADFSDPSREE LMKALEPFMK SASPSLSPPS FPLPMFPQLS FLPNMGFAQA  60
TPLGLNQLTP FQIIQIQHQL NQRRTFVSNL SPKPVPMKNF SCSSSKSRKL YRGVRQRHWG  120
KWVAEIRLPK NRTRLWLGTF ETAEEAAMAY DQAAYKLRGE SARLNFPHTR HDGDGLVGNF  180
KPLHASVEAK LQAICQSLRK TEESCSVSAQ TELVQPKTEQ ETELSDKTEP GFPRFDGHSL  240
SDESRAGSSS PESGITFLDF SDSGIDEIGN LGLEKFPSVE IDWEAISKLS EP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21109167160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-21109174470ATERF1
3gcc_A1e-21109174470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531386.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-119ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLV4MDE31e-121V4MDE3_EUTSA; Uncharacterized protein
STRINGXP_010531386.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-109ERF family protein