PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531346.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 303aa MW: 32872.3 Da PI: 8.4855

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.8e-38	20	76	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprCdstntkfCyynnys sqPr+fCk+CrryWt+GGalrnvPvGgg+rk+++ XP_010531346.1 20 PPLRCPRCDSTNTKFCYYNNYSFSQPRHFCKNCRRYWTRGGALRNVPVGGGSRKHRR 76 5789**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-24	20	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	22	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	22	76	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	24	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MMTSASKPPN TEEGPRKATP PLRCPRCDST NTKFCYYNNY SFSQPRHFCK NCRRYWTRGG 60 ALRNVPVGGG SRKHRRPLKS SSSPSSSTIL SDSYKLAPSD NISAGGFKFF PGLASHDDLG 120 SFQLNSAMYS YPTSGGFSGS LMPENNTHVG SLNIDANLAS SIESLSSLNK DLHRKLQQRR 180 LAMHLREHFD QTQKETAANA DPPLVFPTAP ESVVSGGFPT REGTNMVANS ESASTTTTTT 240 TTGEWFFESA GFLLQPSSSS PSPAVAVSGN VENNGNGDGN MGIWHGFQAW GDLHNHHFNN 300 DLP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531346.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531346.1	0.0	PREDICTED: dof zinc finger protein DOF4.7-like
STRING	XP_010531346.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-40	Dof family protein