PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531337.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 308aa MW: 35129.7 Da PI: 4.9709

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1e-11	142	184	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N++++ Lr+++Pk +K++ +iL A++Y+k+L XP_010531337.1 142 LAERRRRKRLNERLSMLRSIVPKI-----TKMDRTSILADAIDYMKEL 184 58*******************7.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.612	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-15	139	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	142	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-15	142	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	6.28E-4	234	275	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEQKEDGFME DAMEARTETW ANNLCNNEVY DLRFPNEWSF GCFNEIPVLP TSTPSFMELI 60 SNPTLAECPF SMISEDHLQF FGGGSFAHEE YNYAPSLFDQ EQCNISCCKV ETNRDNIINV 120 SHDSKGKGKV KNLQGQPSKN LLAERRRRKR LNERLSMLRS IVPKITKMDR TSILADAIDY 180 MKELLDKINR LEEKEPDNSR NPTNLVRGLR QLKNTKAGAT NSLKFEVERR ECDTRIDFCC 240 EAKPGLLLST VCTLEALGLE IQQCVISSFG DFSFQASCSE NAEQRELRGC EDLKEALLRN 300 VGYGRIFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	150	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531337.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531337.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-69	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A061DIW8	1e-81	A0A061DIW8_THECC; DNA binding protein, putative isoform 1
STRING	XP_010531337.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-63	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]