PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531224.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 295aa MW: 32024.1 Da PI: 4.3564

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.3	1.3e-43	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vh++FGasn+ k+l+++p+++reda++sl+yeAear+rdP+yG+vg+i+ lqq l++++++l+ XP_010531224.1 5 PCAACKLLRRKCTQECVFAPYFPPSQPQKFAFVHRVFGASNMAKILNEIPNHQREDAVNSLYYEAEARLRDPIYGCVGLISFLQQYLKKVQHDLV 99 7*********************************************************************************************9 PP DUF260 96 llkee 100 + k+e XP_010531224.1 100 ASKNE 104 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.842	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-42	5	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPSQ PQKFAFVHRV FGASNMAKIL NEIPNHQRED 60 AVNSLYYEAE ARLRDPIYGC VGLISFLQQY LKKVQHDLVA SKNELATYVG IEAVLPYLPP 120 PGNPPPNFMA TPSPLPLPME GMPAVMPQGQ ALAMREPNLP QEQQQFTASD AQRMAAMLLD 180 RGDHGIFGGG FGIENSGSVT ATGFNQMDIN QVGGSSSAGP SLALGSFGDT YQINQEAEQG 240 HELNPDQLQT QLMLQPPEPQ EEPEGQFLMA EGEPEQMQEP QMGGGGRLGS EEASN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	2	118	8	129	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	2	118	8	129	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531224.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531219.1	0.0	PREDICTED: LOB domain-containing protein 10-like
Refseq	XP_010531220.1	0.0	PREDICTED: LOB domain-containing protein 10-like
Refseq	XP_010531221.1	0.0	PREDICTED: LOB domain-containing protein 10-like
Refseq	XP_010531222.1	0.0	PREDICTED: LOB domain-containing protein 10-like
Refseq	XP_010531223.1	0.0	PREDICTED: LOB domain-containing protein 10-like
Refseq	XP_010531224.1	0.0	PREDICTED: LOB domain-containing protein 10-like
Swissprot	O64836	1e-118	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	D7LG10	1e-124	D7LG10_ARALL; LOB domain family protein
STRING	XP_010531219.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	4e-95	LOB domain-containing protein 10

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]