PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010531037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ZF-HD | ||||||||
Protein Properties | Length: 318aa MW: 36162.3 Da PI: 9.9305 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.4 | 1.1e-30 | 108 | 164 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +kvrY+eC++NhAa+ Ggh+vDGCgEfmp+ ge t+++l+CaA +CHR+FHRrev+ XP_010531037.1 108 QKVRYRECQRNHAANSGGHVVDGCGEFMPA-GEGDTPESLRCAASDCHRSFHRREVDG 164 789**************************9.77789*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-22 | 109 | 172 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-27 | 110 | 162 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.8E-27 | 111 | 162 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.413 | 112 | 161 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.94E-15 | 245 | 308 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 247 | 310 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.0E-27 | 252 | 308 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEMGEKEREM EMPSSFRYYT SSTDHHGRRK KQATDHQTLY HHHHRPPPPP PIHHGVSERS 60 KPTSRDSDPN LNSDSEPEPV SATPVSPLPR SHARPSPPSH LHHHLRQQKV RYRECQRNHA 120 ANSGGHVVDG CGEFMPAGEG DTPESLRCAA SDCHRSFHRR EVDGELTLNL NTFGHYNVVA 180 ATGKVSSQRN QVFPPPRKPP PPPLLLHHHA SPIMMSFGGG GGGGPAESST EDLNKFHQSL 240 SANGIDQLQQ PRKRFRTKFN QEQKEKMQEF ADKIGWRITK QDDEELQRFC SQINVRRQVF 300 KVWMHNNNKQ AAARKKQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-20 | 253 | 307 | 18 | 72 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010531037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010531036.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_010531037.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 2e-92 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A078JR93 | 3e-96 | A0A078JR93_BRANA; BnaCnng66730D protein | ||||
STRING | XP_010531036.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-81 | homeobox protein 24 |