PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530953.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 852aa MW: 94846.2 Da PI: 6.8351

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	532	582	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_010530953.1 532 EKTISLEILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 582 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	521	602	IPR003035	RWP-RK domain
Pfam	PF02042	7.9E-25	534	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.08E-23	744	836	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.4E-24	750	834	No hit	No description
SMART	SM00666	2.0E-26	753	836	IPR000270	PB1 domain
PROSITE profile	PS51745	29.239	753	836	IPR000270	PB1 domain
Pfam	PF00564	7.3E-20	754	835	IPR000270	PB1 domain
CDD	cd06407	6.82E-43	754	835	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MDQESFDLAA TSSTQSEKLL VEGAEAGRRW WICPAPSSSV KDRLVHAIQH LQEAVIDKNF 60 LIQIWVPFQK GGKNFLTTLE QPHLVNPKYL SLQEYRHVSE KYSFPADEDS KESVGLPGRV 120 FLGKLPEWTP DVRFFRSEEY PRIKEAQKCD VRGSLALPVF ERGSGTCLGV VEIVTTTQKI 180 NYRPELENIC KALEAVDLRS SSNLNLPSIE FLQVYNEFYQ AALPEISEFL VSVCTLYDLP 240 LALTWAPCAR QGKSGCRHSD ENYSQCVSTI DSACFVPDEH SKNFLEACSE HHLLQGEGVV 300 GKAFKMNKRC FVPDVTTFSK TNYPLSHHAK IFGLHAALAV PVKNKYTGAV EFVLEFFLPK 360 ACIDTESRKE MLILLSTTLE RDFRSLNLVV DKETEEEVIL PVRDTMVFLD HPLGGGEATQ 420 NLKSSTLTEI SREESSWISH MMEANRKGKG VSLSWEYQKE EPKEEFKMTT GWDDNQPDPD 480 HHNFLSGAGQ FQRGSSSGFM IDIDPSIESP PSGGGQTSGN RKPGEKRRTK TEKTISLEIL 540 RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLKKLQ LVMDSVQGVQ 600 GSIQLNSFYT SFPELSSPNM SGSGLYLKSN DQSAHLNTQP ENGVSPQENA TAPRSPSSSC 660 SQSSGSSTCC STGANQSTNT ANTSNTAIPL VAENAGGILK RAHSEAELHI VNQEEPKVFW 720 RTQSHKTFND HPLLENLPPL PGSSRRSLKA GGAVKVKATF GEAKVRLSLL PGWGFKELQQ 780 EIARRFNIDD ITRFDLKYLD DDREWILLTC DADLEECINI YRSYQSHTIK ISVNQAFQVK 840 LGSSFGSAAP LS

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MDQESFDLAA TSSTQSEKLL VEGAEAGRRW WICPAPSSSV KDRLVHAIQH LQEAVIDKNF  60
LIQIWVPFQK GGKNFLTTLE QPHLVNPKYL SLQEYRHVSE KYSFPADEDS KESVGLPGRV  120
FLGKLPEWTP DVRFFRSEEY PRIKEAQKCD VRGSLALPVF ERGSGTCLGV VEIVTTTQKI  180
NYRPELENIC KALEAVDLRS SSNLNLPSIE FLQVYNEFYQ AALPEISEFL VSVCTLYDLP  240
LALTWAPCAR QGKSGCRHSD ENYSQCVSTI DSACFVPDEH SKNFLEACSE HHLLQGEGVV  300
GKAFKMNKRC FVPDVTTFSK TNYPLSHHAK IFGLHAALAV PVKNKYTGAV EFVLEFFLPK  360
ACIDTESRKE MLILLSTTLE RDFRSLNLVV DKETEEEVIL PVRDTMVFLD HPLGGGEATQ  420
NLKSSTLTEI SREESSWISH MMEANRKGKG VSLSWEYQKE EPKEEFKMTT GWDDNQPDPD  480
HHNFLSGAGQ FQRGSSSGFM IDIDPSIESP PSGGGQTSGN RKPGEKRRTK TEKTISLEIL  540
RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLKKLQ LVMDSVQGVQ  600
GSIQLNSFYT SFPELSSPNM SGSGLYLKSN DQSAHLNTQP ENGVSPQENA TAPRSPSSSC  660
SQSSGSSTCC STGANQSTNT ANTSNTAIPL VAENAGGILK RAHSEAELHI VNQEEPKVFW  720
RTQSHKTFND HPLLENLPPL PGSSRRSLKA GGAVKVKATF GEAKVRLSLL PGWGFKELQQ  780
EIARRFNIDD ITRFDLKYLD DDREWILLTC DADLEECINI YRSYQSHTIK ISVNQAFQVK  840
LGSSFGSAAP LS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530953.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019057401.1	0.0	PREDICTED: protein NLP2-like isoform X2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	V4MB36	0.0	V4MB36_EUTSA; Uncharacterized protein
STRING	XP_010530951.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein