PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010530952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Nin-like | ||||||||
Protein Properties | Length: 965aa MW: 107108 Da PI: 6.4171 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.5 | 1.3e-28 | 645 | 695 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_010530952.1 645 EKTISLEILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 695 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.348 | 634 | 715 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.1E-25 | 647 | 695 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.64E-23 | 857 | 949 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.2E-24 | 863 | 947 | No hit | No description |
SMART | SM00666 | 2.0E-26 | 866 | 949 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 29.239 | 866 | 949 | IPR000270 | PB1 domain |
Pfam | PF00564 | 8.6E-20 | 867 | 948 | IPR000270 | PB1 domain |
CDD | cd06407 | 7.08E-43 | 867 | 948 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 965 aa Download sequence Send to blast |
MEGGSGGGGF SPNSSFGTFP ETAMDLDFME ELLFDGCWLE TTDGKSFKQP GPSPSNSNSV 60 KDSPFLFRYQ DLKSSNVGLN PPQNTSNGET ESKLPPSPTY LKKIQDLHET HQSMDQESFD 120 LAATSSTQSE KLLVEGAEAG RRWWICPAPS SSVKDRLVHA IQHLQEAVID KNFLIQIWVP 180 FQKGGKNFLT TLEQPHLVNP KYLSLQEYRH VSEKYSFPAD EDSKESVGLP GRVFLGKLPE 240 WTPDVRFFRS EEYPRIKEAQ KCDVRGSLAL PVFERGSGTC LGVVEIVTTT QKINYRPELE 300 NICKALEAVD LRSSSNLNLP SIEFLQVYNE FYQAALPEIS EFLVSVCTLY DLPLALTWAP 360 CARQGKSGCR HSDENYSQCV STIDSACFVP DEHSKNFLEA CSEHHLLQGE GVVGKAFKMN 420 KRCFVPDVTT FSKTNYPLSH HAKIFGLHAA LAVPVKNKYT GAVEFVLEFF LPKACIDTES 480 RKEMLILLST TLERDFRSLN LVVDKETEEE VILPVRDTMV FLDHPLGGGE ATQNLKSSTL 540 TEISREESSW ISHMMEANRK GKGVSLSWEY QKEEPKEEFK MTTGWDDNQP DPDHHNFLSG 600 AGQFQRGSSS GFMIDIDPSI ESPPSGGGQT SGNRKPGEKR RTKTEKTISL EILRQYFAGS 660 LKDAAKSIGV CPTTLKRICR QHGITRWPSR KIKKVGHSLK KLQLVMDSVQ GVQGSIQLNS 720 FYTSFPELSS PNMSGSGLYL KSNDQSAHLN TQPENGVSPQ ENATAPRSPS SSCSQSSGSS 780 TCCSTGANQS TNTANTSNTA IPLVAENAGG ILKRAHSEAE LHIVNQEEPK VFWRTQSHKT 840 FNDHPLLENL PPLPGSSRRS LKAGGAVKVK ATFGEAKVRL SLLPGWGFKE LQQEIARRFN 900 IDDITRFDLK YLDDDREWIL LTCDADLEEC INIYRSYQSH TIKISVNQAF QVKLGSSFGS 960 AAPLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010530952.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010530951.1 | 0.0 | PREDICTED: protein NLP2-like isoform X1 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | R0GGQ7 | 0.0 | R0GGQ7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010530951.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |