PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530900.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 270aa    MW: 29370.6 Da    PI: 6.3037
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.9e-0989136451
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                      k+ +r   NReA r++R++Kka+ + Le++v +L a N++L k+l+ 
  XP_010530900.1  89 KKNKKRPSGNREAVRKYREKKKARAASLEDEVIKLRANNQQLLKRLQG 136
                     688888899**********************************99974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-985153IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-1387154No hitNo description
PfamPF077167.0E-1487143IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.33588135IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-690136No hitNo description
CDDcd146861.55E-1198145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDDGELDFSN QEVFSNSNMD DIQPSSCSMD TFFDELLRDS HACTHTHTCN PPGPESTHTH  60
TCFHVHTKIL PAQSEEKVST DDTAEFSEKK NKKRPSGNRE AVRKYREKKK ARAASLEDEV  120
IKLRANNQQL LKRLQGQAAL EAEVARLKCL LVDIRGRIEG EIGAFPYQKP MSTNFPSTNA  180
PFSYMMNPCN LQCDDEAYCL HPGVGGNGGE GAPMNGQGLS GCDFGQLQCL ANQNSGTDDL  240
PASSVGNVPF NSNTSGATKR KGGPRAAKVG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530900.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530901.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530902.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530904.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530905.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530906.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530907.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530908.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530909.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530910.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530911.10.0PREDICTED: basic leucine zipper 19
RefseqXP_010530912.10.0PREDICTED: basic leucine zipper 19
SwissprotQ8VY761e-129BZP19_ARATH; Basic leucine zipper 19
TrEMBLA0A2I4EWS81e-143A0A2I4EWS8_JUGRE; basic leucine zipper 23-like
STRINGXP_010530900.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20362879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.11e-110bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Henriques AR,Farias DDR,Costa de Oliveira A
    Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.
    Genet. Mol. Res., 2017.
    [PMID:28671251]
  4. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]