PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530421.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 483aa    MW: 52540 Da    PI: 8.63
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC788.9e-25220264145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e 
  XP_010530421.1 220 DPEPGRCRRTDGKKWRCSKDAVPDQKYCERHMNRGRHRSRKPVEG 264
                     79****************************************985 PP
2QLQ50.56.5e-18150186137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     s FTa+Q+ +L++Q ++yKy++an P+P+ Ll++i+k
  XP_010530421.1 150 SGFTASQWIELEHQTTIYKYISANIPIPSTLLFPIRK 186
                     56*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-8150186IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.472151186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-12152185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.039220264IPR014977WRC domain
PfamPF088794.9E-21221263IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDFGLVGFHG LVGSSSSSSS SGFGSAVSDP LTKQNLYGSG WFRERGRPVN DENRHDDEDE  60
GSLKGSKRMA KTFCDNLSNS DNGKPLRSSY SPLLFPAVDS HHQENQMLTF SSPRSTAQSA  120
TLLPYFQLSS VSPSSTRDAG CNTSNNGTYS GFTASQWIEL EHQTTIYKYI SANIPIPSTL  180
LFPIRKAFES AGLSCLSGGL LRSNTLGSGG FHMRFSSRDD PEPGRCRRTD GKKWRCSKDA  240
VPDQKYCERH MNRGRHRSRK PVEGQVQGHS SSASVMATIT TAKASASKDT SALLAHHQPQ  300
HSSRSASTNG VFMGKNITCN DQQQEASSFA NLKPKDSYFL SKHENPFEKI SHSEFGFVQS  360
ECGESSHLVY LSDPTTEIPS HHQLLQFMEN LPRNPSQRNQ LSGSSGFSSS TFRNRDKTSA  420
ALSPLRLSCE ADPTPMGLGV EGGSRRNISL PWESPVGGPL GEALQNSSQS SPTGVLQKTT  480
FVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530421.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A0D2TP851e-103A0A0D2TP85_GOSRA; Uncharacterized protein
STRINGXP_010530421.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-51growth-regulating factor 2