PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530396.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 304aa    MW: 34301.5 Da    PI: 8.0405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+  ++ +G+g +W + ++++g++R++k+c++rw++yl
   XP_010530396.1 14 KGPWSPEEDAKLKSHIETHGTGgNWIALPHKIGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.81e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W++Ia+ ++ gRt++++k++w++
   XP_010530396.1  69 GGFSQEEDNIICSLYISIGSR-WSAIASQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.662966IPR017930Myb domain
SuperFamilySSF466894.39E-2611109IPR009057Homeodomain-like
SMARTSM007173.6E-121364IPR001005SANT/Myb domain
PfamPF002491.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001671.20E-91662No hitNo description
PROSITE profilePS5129414.3567117IPR017930Myb domain
SMARTSM007174.1E-1167115IPR001005SANT/Myb domain
PfamPF002493.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2370116IPR009057Homeodomain-like
CDDcd001679.94E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSHIE THGTGGNWIA LPHKIGLRRC GKSCRLRWLN  60
YLRPNIRHGG FSQEEDNIIC SLYISIGSRW SAIASQLPGR TDNDIKNYWN TRLKKRFLGN  120
QLNSSGYMNM TKQGVDKDAM VTSSITSINH NIHDHDVKEK PPYWEREFPC NLPNQSLPFK  180
DFLFEPDGRF SSGDDSQGLM ADGNSFSSFR PIPSPLHPAS SMNHTTPQIH FQTRFGTDQS  240
ETGFQAMQGR SEINHSEVFP FTDTMTCEAS NTGSWGYFTS LMTLPPLCPS SDNYNLTMHP  300
KVLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530396.10.0PREDICTED: transcription factor RAX3-like
TrEMBLV4SFN32e-84V4SFN3_9ROSI; Uncharacterized protein
STRINGXP_010530396.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.14e-78myb domain protein 68