PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010530388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 414aa MW: 47240 Da PI: 6.5494 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.6e-09 | 341 | 376 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yp+++e+ LA+++gL+++q+ +WF N+R ++ XP_010530388.1 341 YKWPYPTESEKVALAESTGLDQKQINNWFINQRKRH 376 5679*****************************885 PP | |||||||
2 | ELK | 35.8 | 1.7e-12 | 296 | 317 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s XP_010530388.1 296 ELKNHLLKKYSGYLSSLKQELS 317 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.9E-22 | 147 | 191 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.8E-23 | 148 | 190 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.1E-29 | 201 | 252 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.3E-24 | 207 | 249 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.0E-6 | 296 | 317 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.243 | 296 | 316 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.3E-10 | 296 | 317 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.005 | 316 | 379 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-19 | 317 | 391 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.0E-13 | 318 | 383 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 321 | 382 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.34E-11 | 328 | 380 | No hit | No description |
Pfam | PF05920 | 2.0E-16 | 336 | 375 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 354 | 377 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence Send to blast |
MEEYRRHDSS APQRGSFFYT QSSPPNKNDD NNSNSNNNNN YTSGYNSNHH HMLFPNMSSQ 60 LVHHHHHHHQ AGESCFRSDH DQPNPVVKSE ASSSRFLNHY SMLMRAIHNH QEPNNNNNNN 120 GSSNSKSGDN NDDSNSNSNI PVGSEVEAMK AKIIAHPQYS SLLEAYMDCQ KIGAPPEVVD 180 RLTAALQEFE TRQRSAAAVS GDYGAPRDPE LDQFMEAYCD MLVKYREELT RPIQEAMEFI 240 RRIEAQLNMS CQGPVRIFNN ADGKCEGAGS SSEDQDNNSG GETELPEIDP RAEDRELKNH 300 LLKKYSGYLS SLKQELSKKK KKGKLPKEAR QKLLTWWELH YKWPYPTESE KVALAESTGL 360 DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNAALYM DGHYIGDGPY RLGP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010530388.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010530388.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 | ||||
Swissprot | P46639 | 0.0 | KNAT1_ARATH; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | V4N159 | 0.0 | V4N159_EUTSA; Uncharacterized protein | ||||
STRING | XP_010530388.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6566 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-172 | KNOTTED-like from Arabidopsis thaliana |