PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010530315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 332aa MW: 37059.9 Da PI: 9.7218 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 405.9 | 5.1e-124 | 1 | 332 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 mdd g+re r+k+ +y+ a + l +++ +q+m++iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn+l+al+++e XP_010530315.1 1 MDDGGHREngRHKAdQYKTAqsQWLMQHQpsMKQVMAIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDNALAALQYRE 95 9*****999*****9**95443334444321469************************************************************* PP GAGA_bind 89 nsla......salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172 ns+a s++p+g+q+++g+k++++ qq++ +q++++++++re e +++ p +++ a e++k+k r+k+pke+ka+ +kk++ XP_010530315.1 96 NSMAtaagmsSSCPPGCQISRGVKHVHHPQQHHMhhhhmTQMGETTYGTRELEPNDTIP--TSPAGAAESAKPK---RGKRPKEPKATPSNKKGS 185 **999999999*****************999332357899*************988877..6667777888888...566677777776777788 PP GAGA_bind 173 kskkkvkkesader..................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249 k+++k kkes+d + sk+++k ++++ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ ++ XP_010530315.1 186 KNQRKIKKESEDLNkimfvkthdyanedevggSKSDWKGQEMGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPN 280 8999999999995559******************************************************************************* PP GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++tir XP_010530315.1 281 KRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIR 332 ***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.6E-171 | 1 | 332 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.5E-105 | 1 | 332 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MDDGGHRENG RHKADQYKTA QSQWLMQHQP SMKQVMAIIA ERDAAIQERN LAISEKKAAI 60 AERDMAFLQR DTAIAERNNA IMERDNALAA LQYRENSMAT AAGMSSSCPP GCQISRGVKH 120 VHHPQQHHMH HHHMTQMGET TYGTRELEPN DTIPTSPAGA AESAKPKRGK RPKEPKATPS 180 NKKGSKNQRK IKKESEDLNK IMFVKTHDYA NEDEVGGSKS DWKGQEMGLN QVVYDETTMP 240 PPVCSCTGVL RQCYKWGNGG WQSSCCTTTL SMYPLPALPN KRHARVGGRK MSGSAFNKLL 300 SRLAAEGHDL SNPVDLKDHW AKHGTNRYIT IR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010530315.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010530299.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530300.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530301.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530302.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530305.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530309.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530310.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530311.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530313.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530315.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_010530316.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | Q8L999 | 0.0 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | B9R849 | 0.0 | B9R849_RICCO; Uncharacterized protein | ||||
STRING | XP_010530298.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42520.1 | 0.0 | basic pentacysteine 6 |