PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010530169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 393aa MW: 42205.4 Da PI: 4.8022 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 201 | 250 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+ ae Aa a++aa+++++g XP_010530169.1 201 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDPAESAAMAYDAAALRFRG 250 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.684 | 201 | 258 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 201 | 259 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 201 | 259 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-12 | 201 | 250 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 201 | 264 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-13 | 202 | 213 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-15 | 209 | 260 | No hit | No description |
PRINTS | PR00367 | 1.0E-13 | 240 | 260 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSMIIYIYHD FNAKDGAKLA SFKSLLLFKV ANQEEHDFYA TTFTAAAAED DPPPENTGGS 60 AADMYGFEQD PVVGRYNRFG TEMSAMVSAL TQVVSARETS TTTAAVAVDG GGGGGGGSSS 120 CPLSDYGLWV GQKRGRHEDD SPAMTSSCVG GDSSAGGIGG RESITMAPPP PPTSTNFPAT 180 DPPESSAFPY QETGDIDTRR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDPAESAAMA 240 YDAAALRFRG NKAKLNFPEN VRILPPPLPP HSASPPQAPV DKALTDYWRY SQLLQSSGDF 300 YNLQIPFFRR GQEQGSSDML EQVVLQATRS PSSSSSSSST SSSSSSFASY PLVFPASDQT 360 PPPSERIFRA PENQNSQTSF SDLDKPSNTD SGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 200 | 261 | 4 | 66 | ATERF1 |
3gcc_A | 4e-22 | 200 | 261 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010530169.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010530169.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110 | ||||
Swissprot | Q70II3 | 3e-40 | EF110_ARATH; Ethylene-responsive transcription factor ERF110 | ||||
STRING | XP_010530169.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 9e-37 | ethylene response factor 110 |