PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530161.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 247aa    MW: 27418.5 Da    PI: 8.3756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d+++++G g+W++ ++  g+ R++k+c++rw +yl
   XP_010530161.1 14 KGAWTKEEDLRLTDYIRKHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.12e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
   XP_010530161.1  67 RGNFTDEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416961IPR017930Myb domain
SMARTSM007173.1E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-2913108IPR009057Homeodomain-like
PfamPF002492.2E-151461IPR001005SANT/Myb domain
CDDcd001671.14E-101661No hitNo description
PROSITE profilePS5129428.10562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2865116IPR009057Homeodomain-like
SMARTSM007172.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667111IPR001005SANT/Myb domain
CDDcd001671.03E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDLRLTDYIR KHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPQTHRPIN EPAAVTDSNT ASSQRTPAAP PQNAAVPSTF PNVNGFTSDA ISPKSESSSD  180
HGATTSGTTT DEDLRQNGEC YYSDNINSGR EELNLELTLG TGSTRWVESG RITGVGSSAE  240
SKPWWVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
1h8a_C2e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530161.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530161.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ388511e-129MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A178UZB81e-126A0A178UZB8_ARATH; MYB6
TrEMBLV4LFW21e-126V4LFW2_EUTSA; Uncharacterized protein
STRINGXP_010530161.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-122myb domain protein 6