PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529859.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 194aa    MW: 22238.4 Da    PI: 10.2213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-05101123123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+sF +   L  H+r+H
  XP_010529859.1 101 HECSICGQSFGSGQALGGHMRRH 123
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.100.0014760IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576671.87E-750123No hitNo description
PfamPF139121.5E-105075IPR007087Zinc finger, C2H2
PROSITE profilePS501579.665178IPR007087Zinc finger, C2H2
SMARTSM003550.375173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.100.00195111IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139125.3E-12100124IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076101123IPR007087Zinc finger, C2H2
SMARTSM003550.0087101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMRRERSESF EKTAKPLDIA KCLMMLSRTF AATEPKMVTD RSVTYENTNH FECKTCNRKF  60
QSFQALGGHR ASHNKRPRSE SSDQDQEQQT KKHINNDKQR HECSICGQSF GSGQALGGHM  120
RRHRTTLLSE PRALVTEPPA RTLYPTVHGK HVLKRCNSSK RVFSLDLNLT PLENDLEYVF  180
GKALVPKIDM KFVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529859.11e-145PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD43e-65ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3P6CXK05e-67A0A3P6CXK0_BRACM; Uncharacterized protein
STRINGXP_010529859.11e-145(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-66C2H2 family protein