PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529826.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 414aa    MW: 47304.7 Da    PI: 10.2411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08331380147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ + ++     ++Rt  ++k++w ++
   XP_010529826.1 331 RRPFTVSEVESLVQAVEKLGTGRWRDVKSHAFddaNHRTYVDLKDKWKTL 380
                      679****************************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.441326385IPR017930Myb domain
SMARTSM007174.6E-8330383IPR001005SANT/Myb domain
PfamPF002493.0E-6331380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-11331381IPR009057Homeodomain-like
CDDcd116602.44E-16332382No hitNo description
SuperFamilySSF466891.25E-15332412IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLDCGFNGYQ LPVVPRACRS PRGRAPITKR SIKNQRDDFE ISARVVEKFS DERESKASLD  60
TLSRETEDIE EEEDEREERS PVSNLLEAME VEVKPIPCVT RERTPNVSLS KDWLALGPSM  120
ANCSLKREDC RVEEPTRSEE GDEKKPRTWK SVSGSKIDGK RKMSYPKERV SSNTNSHQES  180
ERMYPFKKRK FFHQNHRFES CKNVKFNIKS FKIPDLFVDI PVSATVGTLK ATVMEAVTKI  240
LNDGLKVGVL LRGKNVGDDS KTLIQTGIRR DDNHGSVGFT LEPPKPGSTT KTLQTRRSVN  300
RRVENTAVSV VPVRIKPISR PETISVQRRI RRPFTVSEVE SLVQAVEKLG TGRWRDVKSH  360
AFDDANHRTY VDLKDKWKTL VHTAKISPRQ RRGEPVPQEL LDRVLTAHAF WSDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2aje_A5e-47327412994telomere repeat-binding protein
2juh_A1e-4632741413100Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529826.10.0PREDICTED: telomere repeat-binding protein 6
SwissprotQ9M3471e-144TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLD7LUM41e-146D7LUM4_ARALL; Predicted protein
STRINGXP_010529826.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.12e-93TRF-like 4