PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 1019aa MW: 113214 Da PI: 6.9931 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 2.9e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_010529802.1 126 FCKILTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNTWNFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFV--RDE 216 99*****************************954.4444.48************************************************..456 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010529802.1 217 KSQLLLGIRRA 227 7778***9997 PP | |||||||
2 | Auxin_resp | 125.7 | 3.1e-41 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m feted+ rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_010529802.1 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMLFETEDCGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-43 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-42 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-20 | 125 | 226 | No hit | No description |
SMART | SM01019 | 3.1E-24 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.717 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.3E-36 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.6E-10 | 889 | 978 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.747 | 892 | 985 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.52E-8 | 908 | 970 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1019 aa Download sequence Send to blast |
MKAPSNGVLP NSTEGERKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 ADFIPSYPNL PSKLICLLHN VTLHADTETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNR 120 QPTEFFCKIL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWNFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL LLGIRRASRQ TPALSSSLIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMLF 300 ETEDCGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGDRPSRVS IWDIEPVITP 360 FYICPPPFFR PKFPRQPGML DDELDIENAF RRAMPWLGDE YGGMKDGQSS MFPGLSLVQW 420 MNMQQTNPLS AATTQFPSRL SSYNLPNNFG SDDASKLLNF QSPNAHFSKP NGGVANHISQ 480 LQQQQQPKPQ QQLQKHLQQQ GAHPGSVSNL VVGSSQVPCH TVHQSNGFSQ TQIQQQALLS 540 SGSKTHQNNL FSGNKGSSPL TSLGQDFQFQ QQMEQQNSNQ LLRSQQEHVQ SVLHSSPNPQ 600 QPQNQQLSKQ NLLQQQQQQQ QLQLQLLQKL QQQQQQQQQQ QQQQQQLILP VSSSLHQSQN 660 HQMLLPQIQQ PANGNNFSTS TTFMQPPPVT VSQSQGQMNK AIIPVRTHSG QTDGEAPSCS 720 TSPSANNNVH VSASNFLPAS NHVPELYSKT DGRIKQEQFK YKATMADQVD VSTSGTTYCP 780 DVAIAPQNFS LPSFGLEGDV QSHPRHNLPY AGNFDGVTPD ALYSQKDFHN LVNNYGGTPR 840 DIETELSSAG ISSQSFGIPN IPLKPGCSND VGINDSAILN SGLWANQAQR MRTYTKVQKR 900 GSVGRSIDVT RYRGYDELRH DLARMFGIEG QLEDPQTSDW KLVYTDHEND ILLVGDDPWE 960 EFVNCVQNIK ILSSAEVQQM SLDGDLAAIP VPIQACSGTE SGNAWKVHYD DTSAASFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-171 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529802.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529802.1 | 0.0 | PREDICTED: auxin response factor 19 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | V4KB06 | 0.0 | V4KB06_EUTSA; Auxin response factor | ||||
STRING | XP_010529802.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |