PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529770.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 299aa    MW: 33055.6 Da    PI: 6.9623
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.3e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE + + +a +++ ++   +W ++a++++ g+t  +++  ++ 
   XP_010529770.1 28 KWTAEENKTFENALALYDNDtpdRWFKVAAMIP-GKTVGDVIKQYRE 73
                     7********************************.******9999986 PP
2Myb_DNA-binding50.35.5e-16170214347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + k+Rt+ q+ s+ qky
   XP_010529770.1 170 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVKTRTPTQVASHAQKY 214
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-42274IPR009057Homeodomain-like
PROSITE profilePS5129310.0812479IPR017884SANT domain
SMARTSM007173.0E-92577IPR001005SANT/Myb domain
CDDcd001674.63E-82874No hitNo description
PfamPF002499.0E-82873IPR001005SANT/Myb domain
SuperFamilySSF466894.24E-112881IPR009057Homeodomain-like
PROSITE profilePS5129421.015163219IPR017930Myb domain
SuperFamilySSF466891.24E-17164218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-17166218IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-13167214IPR009057Homeodomain-like
SMARTSM007178.3E-14167217IPR001005SANT/Myb domain
PfamPF002497.7E-13170214IPR001005SANT/Myb domain
CDDcd001673.46E-12170215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNRGIDVLSP ATYLQTSNWL FQESRGAKWT AEENKTFENA LALYDNDTPD RWFKVAAMIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW GGGFDDGSFF SGNNGGFDVN  120
GYYFAGGKRV SGGRLPGNNS FNVNGYYYFA GGKRSSGGRT PEQERKKGVP WTEEEHRQFL  180
MGLKKYGKGD WRNIARNFVK TRTPTQVASH AQKYFIRQLT GGKDKRRSSI HDITTDTVNV  240
PDPNANAPLV AENADACAVF GQNAFLSDGF FGTPYVSKLQ DHGVLNATQL GGYNAFLQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-172693875RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529770.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H75e-89DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0FXY91e-136R0FXY9_9BRAS; Uncharacterized protein
STRINGXP_010529770.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-137MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]