PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 769aa MW: 84365.9 Da PI: 5.6058 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.1e-08 | 52 | 94 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + XP_010529729.1 52 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 94 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-10 | 45 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 47 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.52 | 48 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-6 | 49 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-5 | 52 | 95 | No hit | No description |
Pfam | PF00249 | 3.3E-6 | 52 | 94 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MQVEPQVLLN AASPLDQGPL LNQDGNPSFA ASTATNVVQL PGAKKPTRQW AAWTHQEEES 60 FFTALRQVGK NFEKITSRVQ SKNKDQVRHY YYRLVRRMNK LLGPELSLDA KNPKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKLFIES LEHQLLKDRK KSIRKRVCQG ENFSAASLGS 180 FSNQSRERGV DNRSLKLILV DSQNIQKLGP GRASIIHSES LGISHGDEKE DIAASRGGRQ 240 RRKQGLSSSP AYRRWEKAAI NGVSLVADAA EHLERASIDK NIDCRKDSGP SEHQSIGKSL 300 LSLGSSDHNP LNETNMQSAT KLKLQLFPID ECTRRALETG KHNPHLELTL SNRKKISSVL 360 EHLNRKWGNS SAASGDLMLF PYSARKETVM SHQRWTQDSF LSAGDVHSMV GSPSVFRLRY 420 GWFIRSAWGS LTSQAPISAS CLQVEQDMNV DEVIGHVAES APLSLHSTAE PSRSLEPSQS 480 VAGPSSEILA HRAESRENLE QISASGPHNE KETGNMSSSD QIDNDDLHVG NDNALSAGEW 540 ADSLTNISIG DLLSEAPGDL LSEAPDNIDS DCADPQVEDT ECLLQDVPFA SDSFDAAIAA 600 HILRHHNEIG ASLTLPSGSC LLWDDEETRD TFSFQNNRLA NASLSAVASP VGTSKLNAEP 660 SHSVEGLPEP DLPSKSADLE DPMEEAPIEP NTADSPERTT LCGLADVYWP DSLGPLDLDI 720 RSSKYSNEDL ILSDSLGGLS RLIASSLDAF QNCSIFGSEN KSKDQPSMV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529729.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529729.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X2 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | D7LJ99 | 0.0 | D7LJ99_ARALL; Tsl-kinase interacting protein 1 | ||||
STRING | XP_010529705.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.1 | 0.0 | TSL-kinase interacting protein 1 |