PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529724.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 423aa    MW: 47623.9 Da    PI: 5.6895
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07297344448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd++ ++G g+W+ I + +     +Rt+ +++++w+++l
   XP_010529724.1 297 WTLSEVVKLVDGISEFGVGRWTNIKNLFFqsaSHRTPIDLRDKWRNLL 344
                      ***************************999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10289347IPR009057Homeodomain-like
PROSITE profilePS5129414.096289348IPR017930Myb domain
SMARTSM007171.8E-7293346IPR001005SANT/Myb domain
CDDcd116602.50E-17295345No hitNo description
SuperFamilySSF466891.87E-15295360IPR009057Homeodomain-like
PfamPF139213.8E-6297359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDWLPDFPET SIGREFQKGD DNVGHASEDK TIDGLHFLMD PKHENDSVDG FLGLGKENNG  60
SGFKMEEVCL GFDFEIWPNY GGLDSYSALE EEAGLKLDIF NGFLDEVDEV EHIYESQDPF  120
PIDTEGTVKV SEFDNDLYVA PNSSSESRSP GISGSIGLST SLKETVREPE AQNVSCDKVV  180
YEEPFNGILG SISNDCQSLC ESEDDKKPLA TFIASQAKLG RDQKKCNATR RSDSLGRTIS  240
PPSYDLRPRK GILNKCHPKQ NTRSDNEVTT SESEEDEFSL SETSKSTCDR RKHQRMWTLS  300
EVVKLVDGIS EFGVGRWTNI KNLFFQSASH RTPIDLRDKW RNLLRASYAI KRNNGEVEEE  360
SKSHARPVPK HILHRIRELA TLHPYPYSKS SPFVSDGSQA QPSVDARTVT KSRKKKKKKK  420
KRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413421KKKKKKKKR
2415421KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529724.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529724.10.0PREDICTED: uncharacterized protein LOC104806488 isoform X2
TrEMBLD7LJB31e-123D7LJB3_ARALL; Uncharacterized protein
STRINGXP_010529718.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-24TRF-like 6