PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 424aa MW: 47752 Da PI: 5.6895 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.5e-07 | 298 | 345 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd++ ++G g+W+ I + + +Rt+ +++++w+++l XP_010529720.1 298 WTLSEVVKLVDGISEFGVGRWTNIKNLFFqsaSHRTPIDLRDKWRNLL 345 ***************************999**9*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 290 | 348 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.096 | 290 | 349 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-7 | 294 | 347 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.47E-17 | 296 | 346 | No hit | No description |
SuperFamily | SSF46689 | 1.87E-15 | 296 | 361 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.8E-6 | 298 | 360 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MDWLPDFPET SIGREFQKGD DNVGHASEDK TIDGLHFLMD PKHENDSVDG FLGLGKENNG 60 SGFKMEEVCL GFDFEIWPNY GGLDSYSALE EEAGLKLDIF NGFLDEVDEV EHIYESQDPF 120 PIDTEGTVKV SEFDNDLYVA PNSSSESRSP GISGSIGLST SLKETVREPE AQNVSCDKVV 180 YEEPFNGILG SISNDCQSLC ESEDDKKPLA TFIASQAKLG RDQKKCNATR RSDSLGRTIS 240 PPSYDLRPRK GILNKCHPKQ QNTRSDNEVT TSESEEDEFS LSETSKSTCD RRKHQRMWTL 300 SEVVKLVDGI SEFGVGRWTN IKNLFFQSAS HRTPIDLRDK WRNLLRASYA IKRNNGEVEE 360 ESKSHARPVP KHILHRIREL ATLHPYPYSK SSPFVSDGSQ AQPSVDARTV TKSRKKKKKK 420 KKRC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 414 | 422 | KKKKKKKKR |
2 | 416 | 422 | KKKKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529718.1 | 0.0 | PREDICTED: uncharacterized protein LOC104806488 isoform X1 | ||||
Refseq | XP_010529719.1 | 0.0 | PREDICTED: uncharacterized protein LOC104806488 isoform X1 | ||||
Refseq | XP_010529720.1 | 0.0 | PREDICTED: uncharacterized protein LOC104806488 isoform X1 | ||||
Refseq | XP_010529722.1 | 0.0 | PREDICTED: uncharacterized protein LOC104806488 isoform X1 | ||||
Refseq | XP_010529723.1 | 0.0 | PREDICTED: uncharacterized protein LOC104806488 isoform X1 | ||||
TrEMBL | A0A178VNS9 | 1e-125 | A0A178VNS9_ARATH; TRFL8 | ||||
STRING | XP_010529718.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-24 | TRF-like 6 |