PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529718.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 424aa    MW: 47752 Da    PI: 5.6895
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07298345448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd++ ++G g+W+ I + +     +Rt+ +++++w+++l
   XP_010529718.1 298 WTLSEVVKLVDGISEFGVGRWTNIKNLFFqsaSHRTPIDLRDKWRNLL 345
                      ***************************999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10290348IPR009057Homeodomain-like
PROSITE profilePS5129414.096290349IPR017930Myb domain
SMARTSM007171.8E-7294347IPR001005SANT/Myb domain
CDDcd116602.47E-17296346No hitNo description
SuperFamilySSF466891.87E-15296361IPR009057Homeodomain-like
PfamPF139213.8E-6298360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDWLPDFPET SIGREFQKGD DNVGHASEDK TIDGLHFLMD PKHENDSVDG FLGLGKENNG  60
SGFKMEEVCL GFDFEIWPNY GGLDSYSALE EEAGLKLDIF NGFLDEVDEV EHIYESQDPF  120
PIDTEGTVKV SEFDNDLYVA PNSSSESRSP GISGSIGLST SLKETVREPE AQNVSCDKVV  180
YEEPFNGILG SISNDCQSLC ESEDDKKPLA TFIASQAKLG RDQKKCNATR RSDSLGRTIS  240
PPSYDLRPRK GILNKCHPKQ QNTRSDNEVT TSESEEDEFS LSETSKSTCD RRKHQRMWTL  300
SEVVKLVDGI SEFGVGRWTN IKNLFFQSAS HRTPIDLRDK WRNLLRASYA IKRNNGEVEE  360
ESKSHARPVP KHILHRIREL ATLHPYPYSK SSPFVSDGSQ AQPSVDARTV TKSRKKKKKK  420
KKRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414422KKKKKKKKR
2416422KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529718.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529718.10.0PREDICTED: uncharacterized protein LOC104806488 isoform X1
RefseqXP_010529719.10.0PREDICTED: uncharacterized protein LOC104806488 isoform X1
RefseqXP_010529720.10.0PREDICTED: uncharacterized protein LOC104806488 isoform X1
RefseqXP_010529722.10.0PREDICTED: uncharacterized protein LOC104806488 isoform X1
RefseqXP_010529723.10.0PREDICTED: uncharacterized protein LOC104806488 isoform X1
TrEMBLA0A178VNS91e-125A0A178VNS9_ARATH; TRFL8
STRINGXP_010529718.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-24TRF-like 6