PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529661.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 322aa MW: 35162.9 Da PI: 8.6388

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+ XP_010529661.1 49 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSN 109 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	42	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-34	50	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDTAQWPQIV VKPLEEIVTN TCPKPPRLQQ PPAKAGAAAG GERKVRPEKD QALNCPRCNS 60 TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG GTLRNIPVGG GSRKNKRSNS SSSHSNNSIN 120 NPANSQQLPP PKKHLSEHHL LSMTRRSLTG QNPNFHETQD LNLGFPHGFR SNFTELIQNI 180 GNGTNKNSDG DRVLVPPCPA TSASMAASLD LLSADNGCSS SFMSSPSAHH HQDPSGYAMQ 240 DHHYKPCTST TALGFSLDHG FHQEESGAMN GAGRLLFPFD DMKSPVSSSS RAIISETSDD 300 QRRGGDHAAA GYWTGMLNGG SW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529661.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529661.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q8LAP8	1e-108	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A398ALR3	1e-115	A0A398ALR3_BRACM; Uncharacterized protein
TrEMBL	A0A3P5ZFK1	1e-115	A0A3P5ZFK1_BRACM; Uncharacterized protein
STRING	XP_010529660.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-89	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]