PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529660.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 323aa MW: 35292 Da PI: 8.4893

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	50	110	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+ XP_010529660.1 50 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSN 110 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	43	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-34	51	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDTAQWPQEI VVKPLEEIVT NTCPKPPRLQ QPPAKAGAAA GGERKVRPEK DQALNCPRCN 60 STNTKFCYYN NYSLTQPRYF CKTCRRYWTE GGTLRNIPVG GGSRKNKRSN SSSSHSNNSI 120 NNPANSQQLP PPKKHLSEHH LLSMTRRSLT GQNPNFHETQ DLNLGFPHGF RSNFTELIQN 180 IGNGTNKNSD GDRVLVPPCP ATSASMAASL DLLSADNGCS SSFMSSPSAH HHQDPSGYAM 240 QDHHYKPCTS TTALGFSLDH GFHQEESGAM NGAGRLLFPF DDMKSPVSSS SRAIISETSD 300 DQRRGGDHAA AGYWTGMLNG GSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529660.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q8LAP8	1e-111	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A398ALR3	1e-118	A0A398ALR3_BRACM; Uncharacterized protein
STRING	XP_010529660.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-92	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]