PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529654.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 919aa MW: 101214 Da PI: 5.1699

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.7e-29	572	622	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ XP_010529654.1 572 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 622 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	7.85E-5	195	266	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.746	561	642	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-26	574	622	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.93E-22	820	907	No hit	No description
SMART	SM00666	4.8E-25	823	905	IPR000270	PB1 domain
PROSITE profile	PS51745	23.4	823	905	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.2E-25	823	904	No hit	No description
CDD	cd06407	6.16E-35	824	904	No hit	No description
Pfam	PF00564	2.6E-18	824	904	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MCEPDEDSTR NGAIPPLPRP RELLMDLDDL DLDGSWPLDQ IPHLFSSNQF ISPFVVSSSS 60 EQPFSPLWAF SDGGGTAAVP TAGDDEKLSP NSGAASSKVE NTAERDRNVQ FPSPLTGLAP 120 PENTDNYCVI KERMTQALRY FKESTEQQIL AQVWAPVRKN GRELLTTLGQ PFVLNPNGNG 180 LNQYRMISLT YMFSVDSESD IELGLPGRVY RQKLPEWTPN VQYYSSREFS RLDHALHYNV 240 RGTLALPVFN PSGQSCIGVV ELIMTSEKIH YAPEVDRVCK ALEAVNLKSS EILDHQTTQI 300 CNEGRQNALA EILEILTVVC ETYKLPLAQT WVPCQHRSVL ANGGGLKKSC TSFDGSCMGQ 360 VCMSTTDMAA YVVDAHVWGF RDACLEHHLQ KGQGVAGRAF LNRSSCFCRD VTKFCKIQYP 420 LVHYALMFKL TSCYAICLQS SHTGDDDYIL EFFLPPAITD KSEQDSLLGS LLATMKQHFQ 480 SLRVASGISF GEEANEVSVE FIEALPDKKL NSRIESIHVP SSGFESNVGE MLLDPQPVVP 540 SSEPVKETSN VADDNGVVKE MKKPERKRGK TEKTISLDVL QQYFTGSLKD AAKSLGVCPT 600 TMKRICRQHG ISRWPSRKIK KVNRSITKLK RVIESVQGTD GALDLTSMAV GSIPWTNGQA 660 TAQPLNSPSG YKEPEPPKNN DSTHNGSNGH SPHEPHGSPP SNGCKPSRTR DDSVGTPTSH 720 GSCEGSYRDE MKALNPEPIF MADVSAASFS MPNRILGSIE PFRGMPIEES GSSKDLRNLC 780 HSVAADEKFP ESNWLNNGNN IYVRPEEEAM EITRVASGSE TRSVTIKASY KEDIIRFRIS 840 SSSGLMELKE EIAKRLKLDA GTFDIKYLDD DSEWVLIACD VDLQECLDIS GFSGSSLVRL 900 LVQDVMANPG SSCESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MCEPDEDSTR NGAIPPLPRP RELLMDLDDL DLDGSWPLDQ IPHLFSSNQF ISPFVVSSSS  60
EQPFSPLWAF SDGGGTAAVP TAGDDEKLSP NSGAASSKVE NTAERDRNVQ FPSPLTGLAP  120
PENTDNYCVI KERMTQALRY FKESTEQQIL AQVWAPVRKN GRELLTTLGQ PFVLNPNGNG  180
LNQYRMISLT YMFSVDSESD IELGLPGRVY RQKLPEWTPN VQYYSSREFS RLDHALHYNV  240
RGTLALPVFN PSGQSCIGVV ELIMTSEKIH YAPEVDRVCK ALEAVNLKSS EILDHQTTQI  300
CNEGRQNALA EILEILTVVC ETYKLPLAQT WVPCQHRSVL ANGGGLKKSC TSFDGSCMGQ  360
VCMSTTDMAA YVVDAHVWGF RDACLEHHLQ KGQGVAGRAF LNRSSCFCRD VTKFCKIQYP  420
LVHYALMFKL TSCYAICLQS SHTGDDDYIL EFFLPPAITD KSEQDSLLGS LLATMKQHFQ  480
SLRVASGISF GEEANEVSVE FIEALPDKKL NSRIESIHVP SSGFESNVGE MLLDPQPVVP  540
SSEPVKETSN VADDNGVVKE MKKPERKRGK TEKTISLDVL QQYFTGSLKD AAKSLGVCPT  600
TMKRICRQHG ISRWPSRKIK KVNRSITKLK RVIESVQGTD GALDLTSMAV GSIPWTNGQA  660
TAQPLNSPSG YKEPEPPKNN DSTHNGSNGH SPHEPHGSPP SNGCKPSRTR DDSVGTPTSH  720
GSCEGSYRDE MKALNPEPIF MADVSAASFS MPNRILGSIE PFRGMPIEES GSSKDLRNLC  780
HSVAADEKFP ESNWLNNGNN IYVRPEEEAM EITRVASGSE TRSVTIKASY KEDIIRFRIS  840
SSSGLMELKE EIAKRLKLDA GTFDIKYLDD DSEWVLIACD VDLQECLDIS GFSGSSLVRL  900
LVQDVMANPG SSCESTGEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529654.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529654.1	0.0	PREDICTED: protein NLP7-like isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4MHY8	0.0	V4MHY8_EUTSA; Uncharacterized protein
STRING	XP_010529652.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]